Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.4e-107 392.1 189 100.0
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.0e-70 270.4 196 73.0
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.1e-50 203.0 192 58.9
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 3.1e-46 189.1 192 54.7
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.8e-46 188.0 193 55.4
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.5e-45 186.8 177 59.3
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.0e-45 186.4 195 53.8
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.6e-45 186.0 177 58.2
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 9.9e-45 184.1 187 56.1
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.3e-44 183.7 190 53.2
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.7e-44 183.3 195 53.8
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.2e-44 183.0 196 53.6
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 6.4e-44 181.4 179 53.6
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.2e-42 177.2 182 53.8
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.6e-42 176.8 188 47.3
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-42 176.8 203 49.3
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.1e-42 176.4 188 51.1
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.6e-42 175.3 183 56.3
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 6.0e-42 174.9 183 55.2
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 7.8e-42 174.5 194 52.1
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-41 173.7 195 51.8
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 3.0e-41 172.6 193 52.3
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 5.1e-41 171.8 198 52.0
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 5.1e-41 171.8 183 51.9
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.1e-41 171.8 189 51.9
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.5e-40 170.2 184 54.3
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.5e-40 170.2 186 50.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.9e-40 169.9 189 51.9
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 2.5e-40 169.5 195 50.3
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.3e-40 169.1 184 49.5
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 4.3e-40 168.7 185 47.6
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 4.3e-40 168.7 180 50.6
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.3e-40 168.7 192 51.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.6e-40 168.3 197 48.7
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 5.6e-40 168.3 174 54.6
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.8e-39 166.0 191 49.2
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.7e-39 165.2 206 51.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 6.2e-39 164.9 189 51.9
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 8.1e-39 164.5 195 47.7
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.4e-38 163.7 213 48.4
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 2.4e-38 162.9 193 50.8
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 3.1e-38 162.5 194 48.5
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 4.0e-38 162.2 189 49.2
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.3e-38 161.8 188 50.5
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 5.3e-38 161.8 189 49.7
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.0e-37 159.8 184 46.7
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 3.4e-37 159.1 193 50.3
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 5.8e-37 158.3 193 49.2
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.6e-37 157.9 198 47.5
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 7.6e-37 157.9 198 47.5
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.9e-37 157.5 198 47.5
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 9.9e-37 157.5 192 48.4
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-36 157.1 189 50.3
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.7e-36 156.8 196 44.4
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-36 156.4 189 50.3
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.9e-36 156.0 183 47.0
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 2.9e-36 156.0 183 46.4
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.8e-36 155.6 186 47.3
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.4e-36 154.5 196 48.0
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.4e-35 153.7 197 48.7
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.4e-35 153.7 197 48.7
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.4e-35 153.7 203 46.8
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.4e-35 153.7 197 48.7
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.9e-35 153.3 202 47.0
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.4e-35 152.9 187 49.2
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 3.2e-35 152.5 189 46.0
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.4e-35 151.8 205 47.8
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 4.6e-34 148.7 183 44.8
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.0e-34 148.3 187 49.2
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 7.8e-34 147.9 288 35.1
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 7.8e-34 147.9 194 47.9
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.3e-33 147.1 183 48.1
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.7e-33 146.7 172 50.6
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.7e-33 146.7 188 47.3
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.3e-33 146.4 173 50.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 3.0e-33 146.0 179 48.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.0e-33 146.0 179 46.9
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 5.1e-33 145.2 174 48.9
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 5.1e-33 145.2 191 49.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 6.6e-33 144.8 177 50.8
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-32 144.1 191 48.2
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-32 144.1 171 48.5
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 1.5e-32 143.7 174 49.4
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.9e-32 143.3 182 49.5
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.5e-32 142.9 185 45.9
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 2.5e-32 142.9 183 45.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 3.3e-32 142.5 189 45.0
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 4.3e-32 142.1 198 44.9
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 5.6e-32 141.7 178 47.2
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.3e-31 140.6 182 44.0
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 2.1e-31 139.8 186 46.2
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 2.8e-31 139.4 188 45.2
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.8e-31 139.4 182 45.6
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.6e-31 139.0 193 46.1
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 8.1e-31 137.9 176 46.6
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 8.1e-31 137.9 185 45.4
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 8.1e-31 137.9 185 45.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.4e-30 137.1 175 48.6
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-30 137.1 187 44.4
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-30 137.1 188 44.1
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-30 137.1 187 44.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.4e-30 137.1 184 44.0
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-30 136.7 186 47.8
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.8e-30 136.7 176 42.0
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.4e-30 136.3 180 42.8
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.4e-30 136.3 179 44.7
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 3.1e-30 136.0 188 45.2
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.1e-30 136.0 196 46.9
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 4.0e-30 135.6 186 44.6
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 4.0e-30 135.6 186 44.6
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.3e-30 135.2 178 45.5
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 9.0e-30 134.4 190 45.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-29 134.0 197 44.2
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 2.0e-29 133.3 180 47.8
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 3.4e-29 132.5 181 43.6
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 7.6e-29 131.3 181 42.0
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 7.6e-29 131.3 181 42.0
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 9.9e-29 131.0 182 44.5
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.2e-28 129.8 185 44.3
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.2e-28 129.8 185 43.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 3.8e-28 129.0 187 48.1
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 4.9e-28 128.6 181 39.8
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.4e-28 128.3 189 44.4
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.4e-27 127.1 188 44.1
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.4e-27 127.1 196 40.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 9.3e-27 124.4 179 42.5
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 9.3e-27 124.4 168 45.8
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 2.7e-26 122.9 189 42.9
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 3.0e-25 119.4 183 44.8
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 3.0e-25 119.4 186 41.4
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 3.0e-25 119.4 191 41.9
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.9e-25 119.0 187 41.2
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 5.1e-25 118.6 179 44.1
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.1e-25 118.6 186 40.9
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 8.7e-25 117.9 167 44.9
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.5e-24 116.3 185 41.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 9.6e-24 114.4 187 43.3
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.1e-23 113.2 184 41.3
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-23 112.8 175 40.0
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-22 110.2 184 40.8
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.8e-22 110.2 184 40.8
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.8e-22 110.2 184 40.8
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-22 109.8 167 46.7
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 3.4e-21 105.9 171 40.9
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 5.8e-21 105.1 171 40.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.8e-21 105.1 172 41.3
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.7e-20 103.6 181 38.7
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.7e-20 103.6 104 51.0
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 8.4e-20 101.3 180 41.1
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-18 97.4 142 44.4
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.3e-17 94.0 206 37.9
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 5.1e-17 92.0 208 35.1
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.1e-16 90.9 127 44.9
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 4.3e-16 89.0 195 33.8
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.3e-16 89.0 145 40.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 7.4e-16 88.2 173 35.8
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 9.6e-16 87.8 172 39.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-15 87.0 127 41.7
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-14 84.3 127 40.9
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-14 84.0 107 43.0
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-14 82.8 99 46.5
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.1e-14 82.8 213 30.0
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-12 77.4 109 44.0
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.2e-12 76.6 218 31.7
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.8e-12 75.9 213 32.9
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 4.9e-12 75.5 178 36.5
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.1e-11 74.3 206 30.6
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.9e-11 73.6 115 37.4
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.2e-11 72.4 177 31.1
TAR629G3365 Trochodendron aralioides HOM05D001131 ORTHO05D000972 4.6e-10 68.9 203 31.0
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.1e-10 68.6 146 36.3
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 6.1e-10 68.6 208 31.7
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.7e-09 64.7 57 56.1
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.3e-08 62.4 90 41.1
QL02p068251 Quercus lobata HOM05D001131 ORTHO05D000972 5.7e-08 62.0 223 26.9
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.3e-07 60.8 187 29.4
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.2e-07 60.1 178 32.6
MBI07_g42010_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 2.8e-07 59.7 217 29.5
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.8e-07 58.9 43 58.1
Nn4g23903 Nelumbo nucifera HOM05D007903 ORTHO05D009925 8.2e-07 58.2 61 52.5
SEGI_15239 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.1e-06 57.8 201 28.4
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.4e-06 57.4 118 34.7
Aqoxy3G01772 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 1.8e-06 57.0 228 28.1
TAR371G0961 Trochodendron aralioides HOM05D001131 ORTHO05D000972 1.8e-06 57.0 218 29.4
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 5.3e-06 55.5 205 27.3
Aqoxy5G02997 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 9.0e-06 54.7 214 27.1
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 9.0e-06 54.7 176 29.0


User provided reference genes

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