Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 0.0e+00 1779.6 885 100.0
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1518.8 872 86.4
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1293.5 875 74.3
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1290.0 875 74.2
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1271.1 873 73.3
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 1.0e-285 986.9 920 56.5
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 1.5e-273 946.4 881 57.1
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 3.8e-272 941.8 872 57.8
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 4.2e-271 938.3 870 57.0
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 4.6e-270 934.9 872 56.1
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 5.7e-268 927.9 880 55.8
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 2.2e-264 916.0 884 55.4
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 1.6e-262 909.8 869 54.9
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 1.1e-260 903.7 875 55.1
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 7.4e-260 901.0 883 55.9
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 4.8e-259 898.3 873 55.1
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 1.4e-258 896.7 877 54.7
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 6.9e-258 894.4 873 55.3
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.0e-257 892.9 868 55.1
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 2.6e-257 892.5 868 55.1
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 2.2e-256 889.4 879 54.7
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.0e-256 888.3 868 54.8
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 4.7e-254 881.7 879 53.9
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.1e-253 878.2 871 54.8
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 3.3e-252 875.5 876 53.8
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 5.7e-252 874.8 872 52.9
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 6.3e-251 871.3 895 52.7
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.1e-250 869.0 879 54.3
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 7.0e-250 867.8 870 54.0
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 5.9e-249 864.8 877 52.8
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 7.7e-249 864.4 869 54.4
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 1.3e-248 863.6 866 53.8
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 3.2e-247 859.0 883 51.8
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 5.5e-247 858.2 888 51.9
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 1.6e-246 856.7 895 52.7
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 1.8e-245 853.2 883 52.1
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 3.3e-244 849.0 876 52.1
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 5.7e-244 848.2 886 51.7
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 2.8e-243 845.9 879 51.8
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 4.8e-243 845.1 885 51.4
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 4.1e-242 842.0 892 52.4
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 6.5e-240 834.7 881 52.2
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 1.5e-239 833.6 886 50.0
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 9.4e-239 830.9 873 51.3
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 2.1e-238 829.7 883 51.2
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 3.6e-238 828.9 874 51.4
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 8.3e-235 817.8 879 49.8
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 5.3e-234 815.1 868 51.7
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 5.9e-233 811.6 946 48.0
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 1.1e-231 807.4 884 49.2
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 3.2e-231 805.8 640 63.3
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.6e-230 803.5 875 51.2
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 6.1e-230 801.6 879 51.4
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 8.8e-229 797.7 883 50.1
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 2.0e-228 796.6 880 49.9
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 7.5e-228 794.7 882 48.5
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 1.8e-226 790.0 881 49.6
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 2.4e-226 789.6 873 50.5
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 3.1e-226 789.3 873 50.5
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 3.1e-226 789.3 881 49.1
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 3.8e-224 782.3 878 49.9
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 2.5e-223 779.6 883 48.6
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 2.8e-222 776.2 885 49.0
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 3.6e-222 775.8 884 49.2
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 4.7e-222 775.4 883 49.4
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 4.0e-221 772.3 878 48.2
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 2.0e-220 770.0 883 49.0
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.0e-220 770.0 816 51.7
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 4.9e-219 765.4 882 47.7
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 8.3e-219 764.6 869 50.1
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 7.0e-218 761.5 866 50.2
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 4.5e-217 758.8 883 47.7
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 7.8e-217 758.1 883 48.7
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 8.6e-216 754.6 865 49.1
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.8e-214 749.6 792 52.0
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 1.5e-212 743.8 869 49.3
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.2e-209 734.2 942 46.5
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 8.0e-206 721.5 884 48.8
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 5.8e-204 715.3 878 47.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.7e-203 713.8 850 47.8
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 3.3e-199 699.5 889 47.1
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 1.4e-197 694.1 845 47.1
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.0e-196 690.3 757 49.7
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 3.3e-191 672.9 879 46.6
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.2e-190 671.0 865 47.7
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 8.7e-184 648.3 891 43.7
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 1.6e-182 644.0 869 42.9
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.8e-168 597.4 675 49.9
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 7.1e-162 575.5 563 56.1
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 9.3e-162 575.1 806 42.1
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 4.6e-161 572.8 436 64.9
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 6.7e-160 568.9 442 66.3
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.9e-148 529.3 897 38.8
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 4.8e-142 509.6 390 64.4
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 2.0e-140 504.2 538 49.8
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 9.4e-114 415.6 829 35.3
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 3.7e-110 403.7 945 34.3
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 3.6e-105 387.1 960 30.5
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.8e-104 382.9 570 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 5.4e-101 373.2 929 32.9
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 3.1e-88 330.9 433 44.8
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 5.6e-66 256.9 281 52.0
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.2e-62 245.0 267 53.2
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 8.4e-62 243.0 881 27.2
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 3.0e-59 234.6 256 52.3
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 4.8e-57 227.3 195 56.4
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 2.1e-52 211.8 235 51.1
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 9.6e-50 203.0 185 53.5
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 4.1e-40 171.0 154 56.5
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.8e-35 155.6 105 66.7
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-35 153.7 528 25.8
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-33 149.1 189 46.6
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 2.2e-33 148.7 121 63.6
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.6e-31 141.7 161 47.2
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-30 139.4 124 59.7
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 1.9e-29 135.6 257 33.1
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.7e-25 122.5 118 50.0
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 3.8e-22 111.3 85 61.2
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-16 92.8 109 51.4
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 3.1e-16 91.7 137 41.6
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.0e-14 86.7 74 59.5
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.6e-12 79.3 63 65.1
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.6e-12 79.3 63 65.1
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 4.7e-12 77.8 57 57.9
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.3e-11 75.5 63 63.5
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 4.0e-11 74.7 363 24.8
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.5e-10 72.8 72 59.7
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 3.3e-10 71.6 57 59.6
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 7.5e-10 70.5 53 58.5
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 9.7e-10 70.1 56 67.9
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-09 69.3 43 62.8
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 8.2e-09 67.0 64 53.1
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 9.1e-08 63.5 29 86.2
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.7e-07 62.0 57 56.1
Actinidia10458 Actinidia chinensis HOM05D000038 ORTHO05D053114 3.5e-07 61.6 42 66.7
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 5.9e-07 60.8 53 52.8


User provided reference genes

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