Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02324 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 8.6e-50 199.9 93 100.0
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 8.1e-16 87.0 98 54.1
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 2.4e-15 85.5 89 55.1
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 2.4e-15 85.5 89 55.1
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 2.4e-15 85.5 88 52.3
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 3.1e-15 85.1 90 57.8
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.1e-15 85.1 90 57.8
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.1e-15 85.1 90 57.8
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.1e-15 85.1 90 57.8
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 3.1e-15 85.1 90 57.8
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 4.0e-15 84.7 89 55.1
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 4.0e-15 84.7 89 53.9
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 4.0e-15 84.7 89 53.9
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 5.2e-15 84.3 97 51.5
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 6.8e-15 84.0 89 53.9
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 6.8e-15 84.0 89 53.9
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 6.8e-15 84.0 89 53.9
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 6.8e-15 84.0 89 53.9
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 6.8e-15 84.0 97 51.5
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 8.9e-15 83.6 90 57.8
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 8.9e-15 83.6 90 55.6
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 1.5e-14 82.8 89 52.8
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 1.5e-14 82.8 89 52.8
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.5e-14 82.8 90 56.7
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 1.5e-14 82.8 87 54.0
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.5e-14 82.8 98 52.0
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 2.0e-14 82.4 89 52.8
Oeu051847.1 Olea europaea HOM05D003235 ORTHO05D003863 2.0e-14 82.4 89 52.8
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 2.0e-14 82.4 89 52.8
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 2.0e-14 82.4 89 52.8
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 2.0e-14 82.4 89 53.9
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 2.0e-14 82.4 89 53.9
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 2.0e-14 82.4 90 55.6
Actinidia26336 Actinidia chinensis HOM05D003235 ORTHO05D003863 2.6e-14 82.0 87 52.9
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 2.6e-14 82.0 88 53.4
MBI18_g41996_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 2.6e-14 82.0 89 52.8
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 2.6e-14 82.0 89 51.7
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.6e-14 82.0 87 50.6
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 2.6e-14 82.0 89 53.9
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 3.4e-14 81.6 89 51.7
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 3.4e-14 81.6 89 51.7
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 3.4e-14 81.6 89 52.8
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 3.4e-14 81.6 89 51.7
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 3.4e-14 81.6 88 53.4
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 3.4e-14 81.6 88 53.4
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 4.4e-14 81.3 89 51.7
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 4.4e-14 81.3 90 54.4
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 4.4e-14 81.3 90 55.6
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 4.4e-14 81.3 89 51.7
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 4.4e-14 81.3 89 52.8
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 4.4e-14 81.3 98 51.0
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 5.8e-14 80.9 89 51.7
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 5.8e-14 80.9 89 52.8
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 5.8e-14 80.9 87 49.4
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 7.6e-14 80.5 89 52.8
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 7.6e-14 80.5 87 51.7
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 7.6e-14 80.5 89 51.7
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 7.6e-14 80.5 89 50.6
Aqoxy2G01314 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 9.9e-14 80.1 89 49.4
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 9.9e-14 80.1 93 50.5
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 9.9e-14 80.1 89 51.7
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 9.9e-14 80.1 90 54.4
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 1.3e-13 79.7 89 51.7
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.3e-13 79.7 98 50.0
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 1.3e-13 79.7 89 52.8
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.3e-13 79.7 98 51.0
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.3e-13 79.7 86 52.3
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.3e-13 79.7 86 52.3
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 1.3e-13 79.7 86 52.3
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 1.3e-13 79.7 90 53.3
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 1.7e-13 79.3 90 53.3
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 1.7e-13 79.3 90 53.3
DCAR_015672 Daucus carota HOM05D003235 ORTHO05D003863 1.7e-13 79.3 89 50.6
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.7e-13 79.3 89 51.7
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 1.7e-13 79.3 89 51.7
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 1.7e-13 79.3 89 50.6
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 1.7e-13 79.3 90 53.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.7e-13 79.3 89 50.6
FAN08G2058 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.2e-13 79.0 90 54.4
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 2.2e-13 79.0 88 48.9
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 2.2e-13 79.0 89 51.7
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 2.9e-13 78.6 89 50.6
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 2.9e-13 78.6 89 50.6
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 2.9e-13 78.6 89 50.6
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 2.9e-13 78.6 88 50.0
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 2.9e-13 78.6 96 49.0
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 2.9e-13 78.6 89 50.6
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 2.9e-13 78.6 89 50.6
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 3.8e-13 78.2 40 85.0
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 3.8e-13 78.2 89 49.4
QL10p000641 Quercus lobata HOM05D003235 ORTHO05D003863 3.8e-13 78.2 88 51.1
Psat1g147840 Pisum sativum HOM05D003235 ORTHO05D003863 4.9e-13 77.8 88 50.0
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 4.9e-13 77.8 87 51.7
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 6.4e-13 77.4 89 49.4
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 6.4e-13 77.4 89 49.4
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 6.4e-13 77.4 89 50.6
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 6.4e-13 77.4 40 82.5
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 6.4e-13 77.4 89 49.4
PGSC0003DMG400018636 Solanum tuberosum HOM05D003235 ORTHO05D003863 6.4e-13 77.4 40 82.5
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 8.4e-13 77.0 89 49.4
RhsimUnG0142800 Rhododendron simsii HOM05D003235 ORTHO05D003863 8.4e-13 77.0 85 51.8
SHI05839 Sapria himalayana HOM05D003235 ORTHO05D003863 8.4e-13 77.0 40 82.5
VMungo0251G3552 Vigna mungo HOM05D003235 ORTHO05D003863 8.4e-13 77.0 89 49.4
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 1.1e-12 76.6 89 50.6
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 1.1e-12 76.6 89 49.4
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 1.9e-12 75.9 89 50.6
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 1.9e-12 75.9 89 50.6
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 1.9e-12 75.9 89 50.6
BraA10t43862Z Brassica rapa HOM05D003235 ORTHO05D003863 1.9e-12 75.9 89 50.6
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.9e-12 75.9 89 50.6
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 2.4e-12 75.5 89 48.3
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 2.4e-12 75.5 89 49.4
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 2.4e-12 75.5 89 49.4
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 2.4e-12 75.5 89 49.4
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 2.4e-12 75.5 89 49.4
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 2.4e-12 75.5 89 49.4
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 2.4e-12 75.5 87 49.4
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 2.4e-12 75.5 89 50.6
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 2.4e-12 75.5 90 54.4
FAN18G1267 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.4e-12 75.5 90 54.4
Atru.chr5.3499 Acer truncatum HOM05D003235 ORTHO05D003863 3.2e-12 75.1 89 49.4
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 3.2e-12 75.1 89 50.6
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 3.2e-12 75.1 89 50.6
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 3.2e-12 75.1 89 50.6
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 3.2e-12 75.1 40 80.0
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 3.2e-12 75.1 89 50.6
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 3.2e-12 75.1 101 45.5
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 3.2e-12 75.1 40 80.0
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 4.2e-12 74.7 89 50.6
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 4.2e-12 74.7 89 48.3
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 4.2e-12 74.7 89 48.3
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 4.2e-12 74.7 89 49.4
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 4.2e-12 74.7 89 49.4
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 4.2e-12 74.7 98 49.0
SMO164G0177 Selaginella moellendorffii HOM05D003235 ORTHO05D003863 4.2e-12 74.7 88 48.9
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 5.4e-12 74.3 87 49.4
MBI02_g46599_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 7.1e-12 73.9 40 77.5
HPP92_011716 Vanilla planifolia HOM05D003235 ORTHO05D003863 7.1e-12 73.9 97 46.4
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 9.3e-12 73.6 89 48.3
Mapoly0005s0123 Marchantia polymorpha HOM05D003235 ORTHO05D003863 9.3e-12 73.6 88 44.3
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 1.2e-11 73.2 89 46.1
FAN13G0036 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-11 73.2 40 80.0
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.7e-11 72.0 39 79.5
Phvul.002G192000 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.7e-11 72.0 40 77.5
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 2.7e-11 72.0 86 47.7
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 3.5e-11 71.6 40 77.5
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 4.6e-11 71.2 97 45.4
Eucgr.G01836 Eucalyptus grandis HOM05D003235 ORTHO05D003863 4.6e-11 71.2 88 47.7
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 4.6e-11 71.2 89 50.6
ATR1159G019 Amborella trichopoda HOM05D003235 ORTHO05D003863 6.0e-11 70.9 98 44.9
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 6.0e-11 70.9 95 44.2
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 7.8e-11 70.5 89 46.1
EL10Ac3g05050 Beta vulgaris HOM05D003235 ORTHO05D003863 1.0e-10 70.1 40 77.5
EL10Ac3g05833 Beta vulgaris HOM05D003235 ORTHO05D003863 1.0e-10 70.1 40 77.5
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 1.0e-10 70.1 87 46.0
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 1.0e-10 70.1 89 47.2
Phvul.002G178901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.0e-10 70.1 40 75.0
Phvul.002G192901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.0e-10 70.1 40 75.0
Pp3c11_26030 Physcomitrium patens HOM05D003235 ORTHO05D003863 1.3e-10 69.7 94 43.6
CBR_g30644 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-10 68.2 40 72.5
Pp3c14_5980 Physcomitrium patens HOM05D003235 ORTHO05D003863 3.9e-10 68.2 40 70.0
AagrBONN_evm.TU.Sc2ySwM_344.5027 Anthoceros agrestis HOM05D003235 ORTHO05D003863 5.1e-10 67.8 40 70.0
Mapoly0113s0056 Marchantia polymorpha HOM05D003235 ORTHO05D003863 5.1e-10 67.8 40 72.5
RcHm_v2.0_Chr7g0219331 Rosa chinensis HOM05D003235 ORTHO05D003863 5.1e-10 67.8 40 75.0
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 6.6e-10 67.4 89 46.1
EL10Ac3g05834 Beta vulgaris HOM05D003235 ORTHO05D003863 8.7e-10 67.0 40 75.0
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 2.5e-09 65.5 40 70.0
HanXRQChr08g0236381 Helianthus annuus HOM05D003235 ORTHO05D003863 4.3e-09 64.7 38 73.7
Eucgr.G01837 Eucalyptus grandis HOM05D003235 ORTHO05D003863 5.6e-09 64.3 40 67.5
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 2.1e-08 62.4 40 67.5
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 4.8e-08 61.2 31 80.6
RhsimUnG0171100 Rhododendron simsii HOM05D003235 ORTHO05D003863 3.4e-06 55.1 30 73.3
Cre06.g273250 Chlamydomonas reinhardtii HOM05D003235 ORTHO05D003863 5.8e-06 54.3 40 55.0


User provided reference genes

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