Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.7e-139 498.8 283 100.0
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 2.8e-88 329.3 228 85.1
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 3.6e-83 312.4 227 78.4
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 4.7e-83 312.0 227 81.9
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.0e-82 310.8 227 81.5
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 4.0e-82 308.9 227 82.4
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 4.0e-82 308.9 227 80.2
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 5.2e-82 308.5 233 78.1
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 4.4e-81 305.4 227 73.6
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.3e-80 303.9 227 79.3
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 2.7e-78 296.2 227 78.9
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.3e-77 293.1 227 77.5
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 3.0e-77 292.7 227 75.8
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 5.0e-77 292.0 247 72.1
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 6.6e-77 291.6 227 78.4
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 3.3e-76 289.3 228 77.2
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 3.3e-76 289.3 227 77.5
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 5.6e-76 288.5 228 77.2
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 9.5e-76 287.7 226 78.3
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 6.2e-75 285.0 227 76.7
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.1e-74 284.3 228 77.2
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 4.0e-74 282.3 226 78.3
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 5.2e-74 282.0 227 74.4
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.2e-73 280.8 227 75.3
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.5e-73 280.4 227 76.2
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 3.4e-73 279.3 227 77.5
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 5.8e-73 278.5 227 70.9
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.7e-72 276.9 227 75.3
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.2e-72 276.6 227 75.3
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.7e-72 275.8 227 75.8
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 3.7e-72 275.8 227 75.8
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.1e-71 274.2 226 72.1
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.1e-71 274.2 227 74.9
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.4e-71 273.1 227 74.4
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 2.4e-71 273.1 223 75.3
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 2.7e-70 269.6 227 72.7
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 4.6e-70 268.9 226 73.5
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 5.0e-69 265.4 226 71.7
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 8.6e-69 264.6 225 74.2
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 7.3e-68 261.5 226 71.7
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 9.5e-68 261.2 225 73.8
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 1.6e-67 260.4 227 73.1
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 2.8e-67 259.6 236 69.9
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.4e-66 257.3 227 73.1
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 1.4e-66 257.3 227 71.8
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.5e-65 253.8 226 69.9
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.4e-65 252.7 227 70.9
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 7.5e-65 251.5 229 68.1
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 7.5e-65 251.5 227 70.0
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.3e-64 250.8 226 68.6
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.3e-64 250.8 227 70.5
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.3e-64 250.8 223 72.2
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 1.7e-64 250.4 227 70.5
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.2e-64 250.0 231 68.8
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.9e-63 246.9 227 71.4
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 1.9e-63 246.9 227 69.6
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 2.4e-63 246.5 247 65.6
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 5.4e-63 245.4 247 65.2
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 7.1e-63 245.0 228 68.9
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 9.2e-63 244.6 227 69.6
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.2e-62 244.2 227 69.2
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.6e-62 243.8 227 67.8
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 2.1e-62 243.4 226 66.4
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.6e-62 242.3 227 68.7
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 7.8e-62 241.5 268 63.4
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.3e-61 240.0 227 68.3
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.1e-60 237.7 223 65.0
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 2.5e-60 236.5 235 62.1
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 2.5e-60 236.5 227 67.8
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.3e-60 236.1 229 62.9
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 5.6e-60 235.3 223 60.5
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 7.3e-60 235.0 228 68.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 9.5e-60 234.6 227 68.3
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 1.6e-59 233.8 227 67.0
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 2.8e-59 233.0 229 68.6
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 6.2e-59 231.9 237 65.0
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.4e-58 230.7 230 57.4
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 6.8e-58 228.4 226 60.6
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 6.8e-58 228.4 228 67.5
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 1.5e-57 227.3 227 65.6
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 2.0e-57 226.9 226 65.9
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 4.4e-57 225.7 226 66.4
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 2.9e-56 223.0 227 66.1
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 1.4e-55 220.7 346 49.1
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 1.9e-55 220.3 226 61.9
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 1.9e-55 220.3 226 63.7
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 3.2e-55 219.5 230 65.2
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 7.1e-55 218.4 226 62.4
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 7.1e-55 218.4 226 61.1
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 2.7e-54 216.5 233 64.4
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 3.5e-54 216.1 227 63.4
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.6e-54 215.7 231 64.1
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.9e-53 212.6 226 65.0
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 8.7e-53 211.5 227 63.0
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.5e-52 209.9 152 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 2.1e-51 206.8 228 59.2
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.4e-50 203.4 226 63.3
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 3.1e-50 203.0 227 61.7
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.5e-49 200.7 226 62.8
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.4e-49 199.5 226 62.4
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.4e-49 199.1 226 62.4
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 4.4e-49 199.1 228 55.7
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 7.6e-49 198.4 228 55.7
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.3e-48 197.6 228 50.9
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.6e-46 189.1 226 59.7
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 6.0e-46 188.7 226 58.8
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 6.0e-46 188.7 226 58.8
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 5.1e-45 185.7 227 59.9
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 8.7e-45 184.9 226 58.0
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.9e-44 183.7 226 57.5
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 5.6e-44 182.2 227 57.7
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 1.3e-43 181.0 227 57.7
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 8.1e-43 178.3 228 59.2
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.1e-42 177.9 226 54.9
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 9.0e-42 174.9 211 61.1
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 2.0e-41 173.7 188 64.4
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.0e-37 161.4 94 80.9
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 4.2e-31 139.4 226 48.2
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.9e-29 132.9 226 43.8
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 6.2e-27 125.6 63 90.5
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 5.3e-26 122.5 226 41.2
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.5e-25 120.9 97 61.9
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 1.1e-23 114.8 105 61.9
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.4e-23 114.4 222 41.0
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 1.4e-23 114.4 229 37.6
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 4.2e-23 112.8 68 79.4
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 5.1e-21 105.9 226 45.6
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 1.2e-14 84.7 162 40.1
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 3.1e-10 70.1 173 39.9
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 3.4e-09 66.6 40 77.5
CDE09G1089 Ceratophyllum demersum HOM05D003023 ORTHO05D003412 8.5e-08 62.0 93 61.3
Hma1.2p1_0076F.1_g039430 Hydrangea macrophylla HOM05D006255 ORTHO05D228104 1.4e-07 61.2 86 51.2
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 4.2e-07 59.7 83 38.6
BcaC08g45812 Brassica carinata HOM05D000068 ORTHO05D004691 6.1e-06 55.8 43 76.7


User provided reference genes

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