Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 3208.3 1635 100.0
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 2580.8 1660 80.7
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 2124.7 1645 67.9
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 2112.4 1646 67.8
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1787.3 1666 58.5
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1737.2 1331 66.4
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1670.2 1649 54.5
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1609.0 1656 54.2
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1587.4 1635 53.8
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1583.9 1658 53.3
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1583.2 1788 51.2
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1570.4 1715 51.8
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1563.9 1634 53.3
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1547.7 1681 53.0
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1542.3 1680 52.4
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1535.4 1700 50.6
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1516.9 1672 51.4
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1501.9 1669 51.0
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1496.1 1645 51.0
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1495.3 1658 51.0
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1489.6 1672 50.6
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1465.7 1666 50.2
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1451.0 1629 49.8
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1450.3 1699 49.0
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1444.1 1299 58.7
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1442.6 1644 50.1
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1437.9 1645 48.6
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1437.6 1393 55.2
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1432.5 1665 48.9
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1431.4 1669 48.4
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1429.1 1667 48.4
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1424.1 1628 48.6
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1422.5 1635 49.0
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1419.8 1636 49.0
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1419.8 1657 48.9
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1419.8 1653 49.2
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1419.4 1675 48.0
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1415.2 1635 48.7
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1414.8 1635 48.6
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1402.5 1654 48.2
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1402.1 1639 48.4
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1396.7 1667 48.0
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1395.9 1655 49.2
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1395.9 1643 48.4
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1392.5 1661 47.7
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1392.5 1650 47.7
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1387.9 1676 47.0
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1386.3 1671 48.3
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1376.7 1648 48.6
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1375.1 1663 46.8
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1374.0 1412 54.1
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1374.0 1658 48.3
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1368.2 1662 47.9
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1367.4 1616 49.1
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1364.7 1638 47.5
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1364.4 1664 47.0
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1364.4 1678 47.1
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1356.3 1633 46.6
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1342.0 1657 47.4
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1334.7 1755 45.4
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1334.3 1615 47.7
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1328.2 1383 50.8
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1327.4 1637 47.3
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1323.1 1691 45.7
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1322.0 1821 44.2
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1318.1 1714 45.8
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1317.4 1529 49.2
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1317.4 1549 47.7
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1308.1 1657 46.1
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1291.2 1709 45.5
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1289.6 1671 46.0
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1283.1 1639 46.6
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1281.5 1379 50.0
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1267.7 1037 63.5
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1244.2 1528 47.5
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1237.6 1647 44.7
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1226.8 1608 44.4
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1208.7 1611 45.5
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1208.4 1681 42.8
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1201.8 1613 45.3
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1197.2 1611 44.6
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1186.0 1614 43.6
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 0.0e+00 1182.5 1528 45.2
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1169.8 1624 44.0
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 0.0e+00 1139.0 1655 41.5
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 0.0e+00 1133.6 1543 44.7
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1110.9 1379 46.3
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 0.0e+00 1110.1 1610 41.4
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 0.0e+00 1107.8 1381 46.6
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 0.0e+00 1107.0 1388 45.9
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1105.1 1378 45.9
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 0.0e+00 1104.7 1631 42.0
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 0.0e+00 1083.9 1124 51.6
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 2.2e-286 989.9 1681 39.6
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 1.5e-277 960.7 1634 38.4
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 3.0e-275 953.0 1002 49.9
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 3.4e-202 710.3 771 51.4
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 3.3e-197 693.7 1364 34.4
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 7.4e-197 692.6 1072 39.8
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 8.8e-190 669.1 1658 31.4
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 2.0e-189 667.9 822 47.0
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 2.1e-183 647.9 1744 31.2
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.0e-166 592.4 802 41.1
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 4.4e-165 587.0 906 38.3
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 9.8e-165 585.9 570 54.0
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 3.2e-160 570.9 820 41.5
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 3.9e-145 520.8 740 42.8
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 2.6e-141 508.1 1284 27.9
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 3.2e-139 501.1 620 45.5
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 1.0e-129 469.5 1588 28.2
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 2.5e-128 464.9 723 42.0
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 7.3e-112 410.2 506 42.9
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 4.8e-111 407.5 406 53.4
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 1.0e-105 389.8 298 65.1
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 2.3e-105 388.7 594 40.4
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.6e-93 348.6 623 38.2
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 2.0e-77 295.8 162 89.5
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.5e-67 262.3 423 38.1
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 5.3e-62 244.6 296 47.3
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 5.5e-59 234.6 485 37.1
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 1.8e-57 229.6 300 51.7
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 9.1e-54 217.2 918 24.6
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 9.4e-51 207.2 292 43.8
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 4.1e-46 191.8 325 45.2
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.1e-42 179.5 159 57.9
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 2.1e-42 179.5 425 33.4
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-34 153.7 233 37.3
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 4.7e-34 151.8 127 60.6
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 8.9e-33 147.5 130 57.7
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 1.8e-30 139.8 129 56.6
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 9.2e-30 137.5 122 54.1
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.0e-29 136.3 268 41.0
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 5.9e-29 134.8 97 64.9
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.2e-26 124.8 209 36.8
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-25 123.6 209 36.8
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.8e-25 121.3 201 37.3
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.8e-25 121.3 201 36.3
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.4e-24 118.6 177 36.7
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.7e-23 115.5 137 40.9
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.7e-21 109.4 188 32.4
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.7e-18 98.6 151 37.1
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.2e-17 95.1 150 34.7
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.5e-16 91.3 150 34.0
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.3e-15 90.5 143 36.4
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.2e-15 89.7 150 34.0
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 3.7e-15 89.0 72 59.7
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-14 86.7 155 36.8
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 5.4e-14 85.1 62 62.9
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.1e-14 84.7 120 35.0
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 1.2e-13 84.0 183 33.9
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.3e-12 80.5 312 28.2
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 1.9e-11 76.6 1389 20.4
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 6.4e-07 61.6 105 39.0
Lalb_Chr10g0099061 Lupinus albus HOM05D004423 ORTHO05D005464 7.1e-06 58.2 71 53.5


User provided reference genes

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