Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 2333.9 1171 100.0
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1933.7 1234 82.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1812.7 1169 79.6
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1764.2 1170 77.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1726.8 1167 76.8
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1695.2 1171 74.0
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1682.2 1175 72.6
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1681.8 1170 74.1
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1681.4 1177 72.8
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1676.4 1173 72.9
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1675.6 1182 72.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1673.7 1173 73.1
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1671.0 1175 73.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1670.2 1170 73.1
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1669.8 1175 72.5
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1669.4 1178 72.2
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1667.5 1178 72.2
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1169 73.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1175 72.7
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1657.1 1173 72.7
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1657.1 1177 72.6
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1657.1 1179 71.8
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1656.7 1174 73.0
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1654.4 1166 72.2
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1168 71.9
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1166 73.2
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1170 72.0
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1647.1 1169 71.6
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1646.7 1177 71.7
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1190 72.0
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1180 71.9
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1169 72.1
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1167 72.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1169 72.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1169 71.9
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1177 72.1
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1625.9 1170 72.1
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1621.3 1179 72.1
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1176 71.4
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1620.1 1170 72.1
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1616.7 1171 70.2
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1185 71.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1213 69.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1177 70.9
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1178 70.5
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1171 71.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1610.5 1176 70.7
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1173 69.7
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1173 71.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1174 70.6
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1604.7 1168 70.8
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1600.5 1175 70.3
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1599.3 1171 69.9
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1208 68.3
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1593.9 1165 71.2
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1588.2 1167 71.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1172 69.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1264 66.5
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1175 70.1
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1587.0 1169 70.3
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1584.3 1101 73.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1583.5 1173 69.0
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1580.1 1141 71.5
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1578.9 1177 69.8
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1572.4 1175 69.6
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1565.4 1174 68.5
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1563.9 1095 72.0
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1562.7 1171 68.0
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1550.4 1118 70.8
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1546.2 1179 67.7
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1543.9 1177 67.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1542.7 1174 68.1
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1536.2 1171 67.9
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1535.8 1168 67.6
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1534.6 1153 68.2
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1532.7 1179 67.1
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1531.9 1169 68.1
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1531.2 1168 68.0
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1530.0 1182 67.6
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1528.8 1168 67.8
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1118 69.1
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1118 69.7
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1525.8 1118 69.7
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1525.0 1170 68.2
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1523.5 1171 67.6
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 1118 69.5
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 1118 69.5
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1522.3 1177 67.4
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1521.9 1118 69.2
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1521.5 1150 67.8
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1518.8 1115 69.6
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1515.7 1176 66.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1514.2 1200 66.3
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1513.4 1147 67.9
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1511.9 1168 67.4
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1510.0 1176 66.9
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1506.5 1150 67.1
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1505.3 1167 67.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1503.8 1106 69.2
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1498.4 1150 67.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1497.6 1167 66.2
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1495.7 1199 65.5
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1495.7 1166 67.0
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1492.6 1167 66.8
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1480.7 1118 68.1
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1456.0 1192 64.3
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1425.2 1098 67.8
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1409.4 1049 67.8
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1402.5 1003 71.1
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1400.6 955 74.9
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1391.7 1124 66.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1383.2 1114 63.1
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1352.4 1198 61.2
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1352.0 1198 61.1
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1347.0 1107 61.4
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1300.4 1047 63.2
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1251.1 883 71.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1192.6 1115 56.4
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1172.1 1148 56.2
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1146.7 741 77.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1106.3 920 64.5
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 830 69.4
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 8.2e-307 1057.4 1119 50.5
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 1.0e-304 1050.4 1129 48.7
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 7.4e-300 1034.2 804 66.8
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.5e-297 1025.0 1084 50.1
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 2.5e-287 992.6 819 63.2
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 3.8e-272 942.2 963 54.1
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.5e-263 912.9 973 54.4
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.7e-257 892.9 586 73.5
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.0e-252 876.7 676 70.1
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.9e-244 847.8 857 51.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 8.4e-227 791.6 1074 41.2
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.6e-223 778.1 456 86.0
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.0e-195 688.3 751 49.3
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 6.9e-189 665.6 722 52.8
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 8.5e-187 658.7 424 75.7
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 4.8e-182 642.9 708 51.4
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.0e-180 637.5 507 65.9
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.9e-170 604.4 435 69.4
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 8.5e-163 578.9 482 64.7
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.0e-160 570.1 613 54.3
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.7e-155 554.7 1035 36.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.9e-141 508.1 407 65.6
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 8.0e-137 492.7 445 58.4
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.1e-133 480.3 428 62.9
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.1e-131 473.4 306 73.9
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.9e-117 428.3 445 54.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.2e-116 425.6 300 68.7
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 8.1e-105 386.3 294 70.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.9e-101 375.2 226 81.9
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 9.3e-101 372.9 1073 28.1
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.0e-91 341.3 1029 28.8
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.6e-89 335.5 1041 26.9
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.3e-82 311.2 983 27.8
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.7e-78 298.9 160 86.2
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-53 216.1 312 44.6
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.9e-53 215.7 318 37.4
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 4.0e-51 208.0 176 58.0
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.9e-45 189.1 123 77.2
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-45 188.3 164 59.1
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.7e-44 185.3 153 68.6
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.4e-43 183.0 219 51.6
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 6.3e-41 174.1 893 22.5
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.0e-40 170.6 150 57.3
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.0e-38 166.8 279 38.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.0e-35 156.8 149 57.0
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 4.4e-34 151.4 134 60.4
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 3.7e-33 148.3 470 26.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 7.0e-32 144.1 162 43.8
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.3e-27 129.0 431 26.5
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 2.2e-25 122.5 111 52.3
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 9.2e-24 117.1 277 26.0
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 9.2e-24 117.1 99 59.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 4.0e-19 101.7 207 36.7
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.5e-18 97.4 82 63.4
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.8e-12 79.0 142 38.7
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 6.2e-12 77.8 56 66.1
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 8.1e-12 77.4 176 38.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 4.4e-10 71.6 43 76.7
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 4.9e-09 68.2 52 55.8
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-08 67.0 79 49.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.1e-08 65.1 36 80.6


User provided reference genes

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