Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.4e-98 361.3 183 100.0
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.2e-72 275.4 207 71.5
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 4.3e-61 238.4 207 58.5
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.2e-60 236.9 207 59.4
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.1e-55 219.5 218 56.0
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.0e-54 217.2 212 55.2
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.7e-54 216.5 221 54.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 3.0e-54 215.7 208 56.7
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.1e-53 213.8 208 57.7
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 7.3e-53 211.1 207 56.0
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 7.3e-53 211.1 209 55.0
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.2e-52 210.3 211 54.5
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.2e-52 210.3 209 55.0
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.1e-52 209.5 210 53.8
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 6.2e-52 208.0 211 55.0
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 6.2e-52 208.0 211 55.0
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.2e-52 208.0 211 52.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.1e-51 207.2 211 53.6
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.4e-51 206.8 225 52.0
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 4.0e-51 205.3 210 53.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.2e-51 204.9 212 52.8
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 6.8e-51 204.5 209 53.6
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 6.8e-51 204.5 211 51.7
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 6.8e-51 204.5 211 52.6
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 6.8e-51 204.5 206 50.5
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 3.4e-50 202.2 211 52.1
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 5.8e-50 201.4 206 53.4
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 7.6e-50 201.1 211 50.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.3e-49 200.3 212 51.9
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.7e-49 199.9 206 52.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 6.4e-49 198.0 207 51.7
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.4e-48 196.1 212 50.0
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 7.1e-48 194.5 205 48.8
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.2e-47 193.7 211 49.8
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 3.5e-47 192.2 197 49.2
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.0e-46 190.7 183 55.7
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.0e-46 190.7 209 50.7
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.3e-46 190.3 203 47.8
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 6.6e-46 188.0 207 48.8
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.1e-45 187.2 207 50.2
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.5e-45 186.0 205 46.8
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 2.5e-45 186.0 210 46.2
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.2e-44 183.7 205 48.3
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 1.6e-44 183.3 206 49.0
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.6e-44 183.3 206 48.1
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.6e-44 183.3 207 47.8
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.6e-44 183.3 199 48.7
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.1e-44 183.0 212 48.1
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.1e-44 183.0 207 46.4
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 2.8e-44 182.6 204 48.0
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.6e-44 182.2 208 50.5
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 3.6e-44 182.2 206 46.6
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 4.7e-44 181.8 209 48.3
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.2e-44 181.4 208 50.0
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 6.2e-44 181.4 204 48.0
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 6.2e-44 181.4 206 47.1
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 8.1e-44 181.0 204 46.6
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-43 180.6 211 47.9
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-43 180.6 211 47.9
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 3.1e-43 179.1 203 47.8
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 4.0e-43 178.7 208 44.7
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.0e-43 178.7 187 51.9
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.0e-43 178.7 187 51.9
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 5.2e-43 178.3 210 48.1
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.5e-42 176.8 210 47.6
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.0e-42 176.4 204 46.1
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.0e-42 176.4 204 44.6
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.0e-42 176.4 203 46.8
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 3.4e-42 175.6 210 48.1
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.8e-42 174.9 210 47.6
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 5.8e-42 174.9 210 47.6
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.6e-42 174.5 207 46.4
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 9.9e-42 174.1 200 44.5
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-41 173.7 204 44.1
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.3e-41 173.7 200 44.5
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.3e-41 173.7 205 47.8
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.7e-41 173.3 211 46.4
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 2.9e-41 172.6 204 44.6
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.9e-41 172.6 209 45.9
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.9e-41 172.6 207 45.9
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.9e-41 172.6 197 46.2
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 4.9e-41 171.8 194 46.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 4.9e-41 171.8 210 47.1
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 4.9e-41 171.8 197 45.7
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 6.4e-41 171.4 210 45.7
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-40 170.2 216 44.0
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 1.4e-40 170.2 204 46.6
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.2e-39 167.2 207 43.5
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.2e-39 167.2 210 45.7
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.6e-39 166.8 211 43.6
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.5e-39 165.6 205 44.4
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 6.0e-39 164.9 212 45.3
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.7e-38 163.3 211 45.5
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 5.1e-38 161.8 203 47.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 6.6e-38 161.4 211 43.1
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.1e-37 160.6 207 43.5
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.1e-37 160.6 191 47.1
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.5e-37 160.2 205 45.4
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.5e-37 160.2 206 45.1
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.5e-37 160.2 211 45.5
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.9e-37 159.8 209 41.1
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.5e-37 159.5 161 55.9
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 3.3e-37 159.1 210 42.4
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 4.3e-37 158.7 208 42.8
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 7.3e-37 157.9 211 42.7
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 9.6e-37 157.5 209 43.1
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.3e-36 157.1 214 44.4
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.3e-36 157.1 211 44.5
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.1e-36 156.4 209 42.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 2.1e-36 156.4 208 42.8
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.8e-36 156.0 210 42.4
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.8e-36 156.0 210 42.9
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 4.8e-36 155.2 212 42.0
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.1e-35 154.1 210 41.9
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.4e-35 153.7 212 40.6
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.8e-35 153.3 212 44.3
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 4.0e-35 152.1 196 44.9
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 6.9e-35 151.4 212 39.6
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 9.0e-35 151.0 212 43.4
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.2e-34 150.6 212 39.6
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.5e-34 150.2 212 39.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-34 150.2 211 39.8
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.5e-34 150.2 211 39.8
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 7.6e-34 147.9 212 40.6
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 2.9e-33 146.0 209 40.7
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 2.9e-33 146.0 209 40.7
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.9e-32 143.3 215 41.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.2e-32 142.5 112 60.7
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.9e-31 137.9 196 41.8
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 8.7e-30 134.4 207 39.1
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.3e-29 132.5 205 40.0
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 5.6e-29 131.7 165 44.2
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 5.6e-29 131.7 155 50.3
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 4.0e-27 125.6 172 41.3
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 4.5e-26 122.1 140 51.4
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 5.8e-26 121.7 134 52.2
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.9e-25 118.6 154 43.5
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 3.5e-23 112.5 161 40.4
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 6.0e-23 111.7 219 34.7
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.3e-21 105.5 108 53.7
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 3.7e-20 102.4 106 50.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 6.2e-20 101.7 89 58.4
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 6.9e-19 98.2 92 52.2
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-18 97.1 77 59.7
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 7.6e-18 94.7 79 59.5
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.0e-17 94.4 134 41.8
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 2.5e-16 89.7 77 55.8
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 9.3e-16 87.8 226 31.4
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.6e-12 77.0 52 71.2
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 9.0e-11 71.2 207 30.4
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 3.9e-06 55.8 85 37.6


User provided reference genes

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