Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 3.1e-265 917.9 462 100.0
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 1.2e-120 437.6 463 55.3
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 2.7e-112 409.8 463 53.1
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 3.5e-112 409.5 463 53.3
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 8.7e-111 404.8 465 52.3
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 9.6e-110 401.4 465 51.6
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.6e-109 400.6 463 52.1
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 1.6e-109 400.6 463 51.0
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 3.7e-109 399.4 461 51.6
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 4.8e-109 399.1 464 51.5
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 1.4e-108 397.5 463 50.5
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 5.3e-108 395.6 463 50.5
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 5.3e-108 395.6 463 51.0
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.0e-106 391.3 465 50.5
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 3.8e-106 389.4 463 49.5
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 4.9e-106 389.0 464 50.0
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 6.5e-106 388.7 463 50.3
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 1.1e-105 387.9 470 49.4
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 5.5e-105 385.6 462 48.7
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 1.2e-104 384.4 462 48.7
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 2.1e-104 383.6 466 49.1
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 2.7e-104 383.3 465 48.2
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 4.6e-104 382.5 463 49.0
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 6.0e-104 382.1 468 48.5
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 7.9e-104 381.7 463 49.9
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 2.3e-103 380.2 463 50.1
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 3.0e-103 379.8 463 49.5
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 1.1e-102 377.9 463 49.7
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 1.5e-102 377.5 463 48.4
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 4.3e-102 375.9 467 49.5
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 1.3e-101 374.4 464 48.9
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 2.1e-101 373.6 464 49.1
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 2.1e-101 373.6 467 48.6
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 3.7e-101 372.9 464 47.4
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 3.7e-101 372.9 463 48.6
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 4.8e-101 372.5 463 48.6
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 4.8e-101 372.5 465 48.0
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 6.3e-101 372.1 464 47.4
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 8.2e-101 371.7 463 49.0
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.4e-100 370.9 464 48.1
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 1.8e-100 370.5 465 48.0
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 2.4e-100 370.2 463 48.4
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 3.1e-100 369.8 466 48.1
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 4.1e-100 369.4 469 47.1
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 5.3e-100 369.0 464 48.3
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 5.3e-100 369.0 465 47.7
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 9.0e-100 368.2 466 47.2
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.2e-99 367.9 471 46.9
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 2.0e-99 367.1 464 47.8
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 2.0e-99 367.1 465 47.7
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 2.2e-98 363.6 465 47.7
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 3.8e-98 362.8 465 47.7
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 3.8e-98 362.8 469 47.1
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 5.0e-98 362.5 462 48.5
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 2.5e-97 360.1 469 46.9
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 2.5e-97 360.1 465 47.3
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 2.5e-97 360.1 465 47.3
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 3.2e-97 359.8 461 48.4
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 3.2e-97 359.8 464 47.6
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 4.2e-97 359.4 465 46.5
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 1.2e-96 357.8 469 46.3
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 2.7e-96 356.7 463 46.7
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 3.6e-96 356.3 466 47.2
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 4.6e-96 355.9 466 47.4
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 6.1e-96 355.5 463 46.4
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.0e-95 354.8 471 46.1
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.0e-95 354.8 441 49.0
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 1.3e-95 354.4 465 46.9
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 1.3e-95 354.4 466 47.9
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 1.3e-95 354.4 467 46.0
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 1.3e-95 354.4 466 47.2
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 1.8e-95 354.0 465 46.9
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 3.0e-95 353.2 478 44.6
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 3.0e-95 353.2 465 47.1
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 3.9e-95 352.8 466 47.2
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 6.7e-95 352.1 462 46.5
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 1.5e-94 350.9 461 45.8
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 1.5e-94 350.9 471 45.9
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 2.5e-94 350.1 459 47.7
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 4.3e-94 349.4 462 46.3
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 5.7e-94 349.0 463 46.7
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 5.7e-94 349.0 466 45.9
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 1.3e-93 347.8 461 45.3
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 1.3e-93 347.8 466 45.7
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 2.2e-93 347.1 473 45.5
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 2.2e-93 347.1 471 45.6
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 2.2e-93 347.1 471 45.4
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 2.2e-93 347.1 463 47.1
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 2.8e-93 346.7 467 47.1
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 2.8e-93 346.7 466 47.0
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 3.7e-93 346.3 471 45.6
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 3.7e-93 346.3 463 46.4
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 3.7e-93 346.3 469 46.3
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 4.8e-93 345.9 463 46.0
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 6.3e-93 345.5 463 46.2
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 8.2e-93 345.1 470 45.5
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 1.1e-92 344.7 470 45.7
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 1.4e-92 344.4 462 46.1
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 1.8e-92 344.0 463 45.1
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 2.4e-92 343.6 461 45.8
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 3.1e-92 343.2 475 44.4
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 4.1e-92 342.8 463 45.8
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 4.1e-92 342.8 469 45.2
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 5.3e-92 342.4 467 45.4
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 6.9e-92 342.0 466 45.3
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 6.9e-92 342.0 472 44.3
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 9.1e-92 341.7 417 49.9
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 9.1e-92 341.7 468 45.9
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 1.2e-91 341.3 464 45.7
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 1.5e-91 340.9 465 44.9
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 1.5e-91 340.9 470 44.7
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 1.5e-91 340.9 469 45.4
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 1.5e-91 340.9 469 45.4
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 2.6e-91 340.1 484 43.8
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 3.4e-91 339.7 428 49.8
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 4.5e-91 339.3 475 44.6
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 2.2e-90 337.0 474 44.1
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 2.2e-90 337.0 466 45.9
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 2.9e-90 336.7 470 45.1
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 3.8e-90 336.3 462 44.6
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 1.1e-89 334.7 462 44.8
unitig_8.g3568 Utricularia gibba HOM05D003525 ORTHO05D004578 3.2e-89 333.2 468 43.8
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 5.5e-89 332.4 463 45.1
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 2.1e-88 330.5 469 43.7
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 3.6e-88 329.7 464 45.0
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 4.6e-88 329.3 469 43.7
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 1.0e-87 328.2 471 42.9
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.4e-87 327.8 461 43.0
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.8e-87 327.4 461 43.0
ClCG02G005050 Citrullus lanatus HOM05D003525 ORTHO05D004578 3.0e-87 326.6 467 44.5
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 1.1e-86 324.7 464 44.0
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 3.3e-86 323.2 466 43.8
MELO3C012526.2 Cucumis melo HOM05D003525 ORTHO05D004578 5.7e-86 322.4 466 44.0
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 7.4e-86 322.0 487 42.3
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 1.7e-85 320.9 463 44.5
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 2.2e-85 320.5 466 43.6
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 3.7e-85 319.7 467 44.1
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 1.1e-84 318.2 462 44.6
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 1.1e-84 318.2 466 44.4
Hund06230 Selenicereus undatus HOM05D003525 ORTHO05D004578 1.1e-84 318.2 465 41.9
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 1.8e-84 317.4 466 44.2
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 6.9e-84 315.5 468 43.4
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.2e-83 314.7 464 42.2
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 1.0e-82 311.6 478 42.3
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 1.0e-82 311.6 288 59.0
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 1.3e-82 311.2 469 42.2
unitig_22.g5174 Utricularia gibba HOM05D003525 ORTHO05D004578 6.5e-82 308.9 463 41.0
HanXRQChr16g0505731 Helianthus annuus HOM05D003525 ORTHO05D004578 8.5e-82 308.5 466 42.5
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 5.2e-79 299.3 462 42.2
HPP92_017152 Vanilla planifolia HOM05D003525 ORTHO05D004578 2.6e-78 297.0 464 40.3
Zm00001eb055650 Zea mays HOM05D003525 ORTHO05D004578 5.3e-76 289.3 486 40.7
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 3.5e-75 286.6 463 41.0
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 3.5e-75 286.6 461 40.6
Os03g0722600 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 3.8e-74 283.1 484 39.7
Os08g0447900 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 5.2e-71 272.7 466 39.1
SEGI_09930 Sequoiadendron giganteum HOM05D003525 ORTHO05D004578 2.2e-66 257.3 473 35.5
Zm00001eb215890 Zea mays HOM05D003525 ORTHO05D004578 4.8e-61 239.6 287 48.8
Actinidia27897 Actinidia chinensis HOM05D003525 ORTHO05D004578 2.0e-51 207.6 251 49.0
Pp3c4_1720 Physcomitrium patens HOM05D003525 ORTHO05D004578 2.3e-50 204.1 500 32.0
Mapoly0074s0004 Marchantia polymorpha HOM05D003525 ORTHO05D004578 2.9e-50 203.8 504 31.9
TPR.G333 Trifolium pratense HOM05D003525 ORTHO05D004578 2.9e-50 203.8 227 50.7
Cpa.g.sc62.144 Carica papaya HOM05D003525 ORTHO05D004578 9.8e-46 188.7 152 67.8
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.7e-45 188.0 462 33.8
SMO174G0095 Selaginella moellendorffii HOM05D003525 ORTHO05D004578 1.1e-44 185.3 489 31.3
MELO3C014785.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.2e-43 181.8 178 51.7
AagrBONN_evm.TU.Sc2ySwM_344.2699 Anthoceros agrestis HOM05D003525 ORTHO05D004578 1.6e-40 171.4 372 33.3
MELO3C019736.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.7e-34 151.4 174 46.0
CBR_g21060 Chara braunii HOM05D003525 ORTHO05D004578 8.6e-34 149.1 276 33.0
PRCOL_00002324 Prasinoderma coloniale HOM05D003525 ORTHO05D004578 1.2e-32 145.2 285 33.7
MCO10G181 Micromonas commoda HOM05D003525 ORTHO05D004578 1.6e-32 144.8 474 25.5
Actinidia27898 Actinidia chinensis HOM05D003525 ORTHO05D004578 7.8e-27 125.9 154 53.9
HPP92_017436 Vanilla planifolia HOM05D000653 ORTHO05D002177 9.5e-25 119.0 85 64.7
TPR.G14489 Trifolium pratense HOM05D003525 ORTHO05D004578 7.6e-22 109.4 66 77.3
Manes.02G225801 Manihot esculenta HOM05D003525 ORTHO05D025801 3.0e-18 97.4 94 58.5
Manes.08G077055 Manihot esculenta HOM05D003525 ORTHO05D025801 6.6e-18 96.3 94 59.6
ECA234G4333 Erigeron canadensis HOM05D003525 ORTHO05D004578 1.1e-17 95.5 55 74.5
Atru.chr7.1490 Acer truncatum HOM05D003525 ORTHO05D037886 1.2e-16 92.0 57 73.7
Ah.12g055710 Amaranthus hybridus HOM05D001818 ORTHO05D001780 2.1e-16 91.3 100 56.0
Cre06.g304100 Chlamydomonas reinhardtii HOM05D003525 ORTHO05D004578 2.1e-16 91.3 313 26.2
MBI16_g46920_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D025801 5.2e-15 86.7 78 60.3
HPP92_017451 Vanilla planifolia HOM05D003525 ORTHO05D025801 5.2e-15 86.7 92 54.3
MELO3C034852.2 Cucumis melo HOM05D003525 ORTHO05D167553 3.6e-08 63.9 49 63.3
C07p60610 Brassica napus HOM05D003525 ORTHO05D019487 4.8e-08 63.5 43 62.8
MD10G1122300 Malus domestica HOM05D003525 ORTHO05D025801 1.1e-07 62.4 65 52.3
Nn2g12769 Nelumbo nucifera HOM05D003525 ORTHO05D004578 2.4e-07 61.2 43 69.8
EL10Ac4g09588 Beta vulgaris HOM05D003851 ORTHO05D005657 4.0e-07 60.5 66 51.5


User provided reference genes

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