Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 0.0e+00 1436.8 715 100.0
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.3e-286 989.6 678 76.4
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 6.5e-198 694.9 761 53.0
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.4e-179 634.0 740 51.6
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 4.4e-178 629.0 759 52.0
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 3.8e-121 439.9 729 40.7
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.4e-112 411.4 715 40.1
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 4.3e-109 399.8 807 34.9
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 4.8e-108 396.4 747 38.6
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 8.5e-105 385.6 730 36.0
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.9e-104 384.4 718 39.7
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.9e-104 384.4 751 36.2
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 5.9e-98 362.8 726 36.5
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-97 361.7 756 36.2
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 2.2e-97 360.9 728 37.4
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.9e-97 360.5 510 44.3
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 3.8e-97 360.1 688 37.8
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 1.4e-96 358.2 760 35.8
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 5.5e-96 356.3 756 34.9
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 2.3e-94 350.9 723 36.5
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.8e-91 341.3 735 35.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 7.0e-91 339.3 733 35.2
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.6e-90 337.4 747 34.9
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.9e-88 331.3 715 36.4
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 5.5e-88 329.7 733 34.8
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 6.1e-87 326.2 727 35.8
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 8.0e-87 325.9 798 33.5
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 6.7e-86 322.8 726 34.4
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 2.2e-84 317.8 719 36.2
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.7e-84 317.0 797 31.7
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 8.2e-84 315.8 392 44.9
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.2e-82 312.0 736 34.6
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.2e-81 307.8 737 35.4
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 7.2e-80 302.8 753 34.5
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.2e-78 296.6 709 33.7
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.6e-77 294.3 688 34.3
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.3e-77 293.9 757 32.9
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.2e-76 291.2 706 32.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 4.8e-76 290.0 714 33.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 1.6e-74 285.0 706 32.4
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.0e-74 284.6 709 34.3
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.7e-74 284.3 709 34.4
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.7e-73 281.6 780 31.9
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.7e-73 281.6 729 32.4
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.0e-73 280.0 699 32.6
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.5e-72 277.7 707 34.5
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 4.2e-72 276.9 743 33.1
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.5e-69 268.5 683 32.4
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 8.3e-68 262.7 757 30.1
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 8.6e-65 252.7 719 31.0
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.5e-64 251.9 734 29.8
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 3.3e-64 250.8 762 30.4
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 5.5e-64 250.0 734 33.7
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 7.2e-64 249.6 755 30.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.2e-63 248.8 720 31.8
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.6e-63 248.4 665 32.0
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.1e-63 246.5 530 35.1
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 5.2e-62 243.4 765 30.6
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.8e-59 235.0 761 29.8
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 9.2e-59 232.6 421 38.0
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 2.7e-58 231.1 549 34.4
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.3e-57 228.8 768 30.2
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 1.9e-56 224.9 678 31.7
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.9e-56 224.9 691 31.0
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 9.5e-56 222.6 535 34.6
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 2.8e-55 221.1 763 27.7
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.7e-55 220.3 766 29.4
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 4.7e-55 220.3 714 32.1
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.3e-52 212.2 485 34.4
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.9e-52 211.1 403 39.0
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 2.7e-50 204.5 757 28.3
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.5e-50 204.1 684 29.7
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 8.6e-49 199.5 753 28.2
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 7.3e-48 196.4 511 32.1
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 3.6e-47 194.1 518 34.2
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 6.2e-47 193.4 706 28.9
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.1e-46 192.6 702 29.9
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.3e-46 191.4 394 35.5
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.2e-45 189.1 736 28.9
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 9.8e-45 186.0 387 37.0
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.4e-43 181.4 744 26.5
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 5.4e-43 180.3 544 29.4
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 2.3e-41 174.9 512 33.0
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 7.3e-40 169.9 687 28.1
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.3e-38 164.9 227 43.2
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.1e-38 164.5 625 28.6
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 4.4e-37 160.6 687 27.1
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.2e-36 158.3 516 27.9
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.4e-35 155.6 674 28.3
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.3e-32 144.4 248 39.5
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.6e-31 141.0 463 29.6
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.7e-31 140.6 395 32.2
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 3.1e-30 137.9 368 30.7
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 4.0e-30 137.5 333 33.3
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 4.0e-30 137.5 316 32.6
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.4e-27 129.0 383 34.2
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.2e-26 125.9 358 32.4
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 1.2e-26 125.9 228 36.4
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.2e-26 125.9 225 38.7
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.0e-26 123.6 382 31.7
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 1.7e-25 122.1 352 33.2
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.7e-25 122.1 370 33.0
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.9e-25 120.9 361 31.9
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 8.7e-25 119.8 302 35.8
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 4.3e-24 117.5 552 27.0
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 9.6e-24 116.3 363 29.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.6e-23 115.5 264 33.3
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.8e-23 114.8 362 32.9
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 3.6e-23 114.4 346 32.4
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.8e-22 112.1 344 29.4
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.9e-22 110.2 212 36.3
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 9.0e-22 109.8 344 29.9
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-21 109.4 363 30.3
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.6e-21 108.2 344 29.7
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.6e-21 108.2 344 29.7
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.6e-21 108.2 344 29.7
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.3e-20 105.9 345 30.1
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.3e-20 105.9 345 30.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.9e-19 102.1 345 30.1
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 2.7e-18 98.2 344 30.5
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 2.7e-18 98.2 344 30.5
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 3.5e-18 97.8 231 32.5
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 3.0e-17 94.7 101 45.5
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 4.8e-15 87.4 294 28.9
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 3.8e-12 77.8 231 30.7
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 6.4e-12 77.0 415 26.3
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.4e-11 75.9 204 31.4
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 2.4e-11 75.1 175 30.3
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 5.4e-11 73.9 288 25.0
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 2.7e-10 71.6 131 34.4
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 3.5e-10 71.2 205 31.2
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-09 69.3 308 28.6
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 1.3e-09 69.3 308 28.6
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 1.8e-09 68.9 311 24.4
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 8.7e-09 66.6 51 58.8
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 5.6e-08 63.9 232 29.7
unitig_37.g12820 Utricularia gibba HOM05D007001 ORTHO05D005587 1.3e-07 62.8 88 37.5
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.3e-07 62.8 155 28.4
SEGI_13389 Sequoiadendron giganteum HOM05D007001 ORTHO05D005587 1.4e-06 59.3 158 31.0
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 3.1e-06 58.2 359 23.1


User provided reference genes

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