Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.9e-257 891.3 437 100.0
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.4e-230 802.7 435 90.6
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.1e-227 791.6 435 88.3
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 4.7e-223 777.7 437 86.7
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.2e-222 774.2 437 86.5
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 2.2e-217 758.8 435 84.6
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.0e-210 735.7 436 81.9
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 3.6e-207 724.9 437 81.9
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.0e-205 719.2 437 80.1
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 8.3e-204 713.8 437 80.5
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 2.4e-203 712.2 436 79.8
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.4e-203 712.2 437 79.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 5.4e-203 711.1 431 80.3
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 9.2e-203 710.3 437 79.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.6e-202 709.5 434 80.2
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 1.6e-202 709.5 436 79.4
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.0e-202 709.1 431 79.6
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.0e-202 709.1 437 83.5
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 4.5e-202 708.0 437 78.5
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.0e-201 706.8 459 76.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.0e-201 706.8 436 79.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.3e-201 706.4 434 78.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.3e-201 706.4 437 78.9
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.3e-201 706.4 437 79.2
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 1.3e-201 706.4 431 80.0
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.8e-201 704.9 437 77.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 3.8e-201 704.9 434 80.0
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 8.6e-201 703.7 434 78.8
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 8.6e-201 703.7 437 77.3
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.9e-200 702.6 436 78.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.5e-200 702.2 429 79.0
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.3e-200 701.8 437 78.5
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.3e-200 701.8 437 78.3
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.6e-199 699.5 437 79.9
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.1e-199 699.1 432 78.0
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 2.8e-199 698.7 454 76.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 3.6e-199 698.4 434 78.1
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 6.1e-199 697.6 435 79.3
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 8.0e-199 697.2 433 78.5
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.4e-198 696.4 434 77.4
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.4e-198 696.4 433 79.2
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.4e-198 696.4 433 76.4
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.8e-198 696.0 434 78.1
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-198 695.7 437 76.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.3e-198 695.7 433 76.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.2e-198 694.5 436 78.0
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 5.2e-198 694.5 433 77.1
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.8e-198 694.1 437 76.4
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.8e-198 694.1 437 77.6
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 8.9e-198 693.7 429 77.9
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 8.9e-198 693.7 454 76.2
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.2e-197 693.3 434 76.7
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.2e-197 693.3 429 78.3
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.0e-197 692.6 433 76.4
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.4e-197 691.8 433 76.4
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.4e-197 691.4 434 76.0
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.4e-197 691.4 449 76.8
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 9.8e-197 690.3 437 76.7
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.3e-196 689.9 434 77.2
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.7e-196 688.3 434 76.7
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 3.7e-196 688.3 433 75.5
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 4.9e-196 688.0 431 77.7
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 4.9e-196 688.0 433 75.8
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 4.9e-196 688.0 434 77.6
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 6.4e-196 687.6 434 77.9
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 8.3e-196 687.2 437 76.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.4e-195 686.4 434 77.4
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.4e-195 686.4 428 75.7
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.4e-195 685.6 431 78.2
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 2.4e-195 685.6 428 76.6
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.4e-195 685.6 434 77.0
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 5.4e-195 684.5 428 75.7
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 7.0e-195 684.1 433 75.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-194 683.3 434 77.0
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.6e-194 682.9 431 78.2
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 7.8e-194 680.6 434 76.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.3e-193 679.1 437 75.1
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 3.9e-193 678.3 429 75.8
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 5.0e-193 677.9 474 70.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.6e-193 677.6 434 76.0
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.1e-192 676.8 433 74.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.6e-192 674.5 450 74.2
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 7.3e-192 674.1 429 75.3
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 9.5e-192 673.7 432 74.3
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 9.5e-192 673.7 428 77.3
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 8.0e-191 670.6 385 84.9
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.8e-190 669.5 428 74.5
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 4.0e-190 668.3 433 74.6
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 6.8e-190 667.5 437 73.0
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.5e-189 666.4 450 73.6
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.8e-189 664.5 436 75.0
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.8e-189 664.5 450 73.6
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 7.5e-189 664.1 433 73.9
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 7.5e-189 664.1 432 75.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.2e-188 662.5 433 73.7
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.9e-188 662.1 433 73.7
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.1e-187 660.2 433 73.4
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.1e-187 660.2 498 66.7
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.9e-187 659.4 433 73.2
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 3.2e-187 658.7 429 74.8
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 4.1e-187 658.3 429 71.6
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 5.4e-187 657.9 426 76.3
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 9.2e-187 657.1 432 74.3
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 9.2e-187 657.1 429 74.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.6e-186 656.4 437 74.4
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 3.5e-186 655.2 433 73.4
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.5e-186 655.2 470 68.5
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.5e-186 655.2 430 74.4
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 6.0e-186 654.4 434 72.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.3e-185 653.3 433 71.4
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.7e-185 652.9 434 72.8
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.3e-185 652.5 433 73.7
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.1e-184 650.2 433 71.8
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 2.5e-184 649.0 435 72.6
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.5e-184 649.0 437 72.3
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 7.3e-184 647.5 434 71.9
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.1e-182 643.7 437 73.7
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 3.1e-182 642.1 437 72.3
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 2.0e-181 639.4 437 70.5
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.0e-181 639.4 428 71.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.4e-181 638.3 433 72.5
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.9e-180 635.6 433 71.1
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.7e-180 635.2 433 73.4
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.4e-179 633.3 430 69.5
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.4e-179 632.5 435 70.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 6.0e-178 627.9 436 71.6
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.3e-177 625.9 429 69.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 3.3e-176 622.1 386 76.9
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.0e-174 615.1 431 68.9
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 1.2e-170 603.6 438 65.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.6e-170 603.2 429 68.8
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 3.6e-167 592.0 380 75.0
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.2e-165 587.0 376 74.5
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 7.8e-162 574.3 433 66.7
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.7e-161 573.2 358 76.5
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 6.6e-161 571.2 358 75.4
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 7.6e-157 557.8 430 61.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.5e-149 533.5 427 58.8
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 6.4e-148 528.1 436 61.5
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 4.6e-146 521.9 428 58.4
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.3e-145 520.4 427 56.9
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.4e-142 510.4 305 82.0
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 8.7e-137 491.1 436 54.8
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.0e-133 479.9 362 65.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.3e-128 462.6 325 70.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.4e-126 457.2 319 73.7
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 7.0e-118 428.3 291 72.5
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 4.7e-114 415.6 223 87.4
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.9e-108 396.4 421 47.0
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 8.5e-108 394.8 502 42.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.6e-104 383.3 425 47.3
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 7.0e-102 375.2 252 72.2
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 8.8e-97 358.2 446 43.7
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.8e-94 350.5 245 68.6
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.3e-92 343.6 215 78.1
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.5e-91 338.2 215 76.7
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.0e-76 291.6 242 62.8
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 6.2e-74 282.3 217 67.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.8e-65 254.2 275 52.0
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 8.9e-65 251.9 195 64.6
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.7e-63 247.7 163 73.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-60 238.4 152 75.0
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 4.7e-58 229.6 232 53.4
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 6.2e-58 229.2 172 64.0
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.2e-56 224.9 196 61.2
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.8e-55 219.9 124 79.8
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.4e-54 216.1 181 61.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 6.0e-53 212.6 129 78.3
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.1e-50 202.2 356 37.6
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-46 191.8 362 37.0
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-46 190.3 138 66.7
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 7.9e-45 185.7 128 69.5
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 3.4e-40 170.2 100 81.0
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.6e-37 159.8 124 60.5
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.6e-29 134.8 131 55.0
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.6e-29 134.8 88 70.5
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 3.9e-28 130.2 66 86.4
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.6e-26 124.8 71 81.7
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.9e-19 101.3 59 81.4
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.8e-17 94.7 87 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 6.9e-17 92.8 87 49.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.5e-11 75.1 60 65.0
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.3e-07 62.0 56 53.6
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 5.0e-07 60.1 134 32.1
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.9e-06 58.2 35 68.6


User provided reference genes

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