Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 2.8e-171 605.1 296 100.0
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.7e-142 508.8 296 84.1
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.2e-122 442.2 293 74.4
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.2e-122 442.2 293 74.4
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.3e-120 436.8 292 72.6
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 7.3e-119 431.0 296 74.7
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.2e-118 430.3 294 73.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 6.8e-117 424.5 293 70.3
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.5e-116 423.3 292 71.2
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-116 422.5 293 72.0
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.3e-115 420.2 292 70.2
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.9e-114 416.4 293 71.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 3.2e-114 415.6 329 65.0
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 9.2e-114 414.1 294 67.7
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 9.2e-114 414.1 294 67.7
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.7e-113 412.5 295 68.1
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.7e-113 412.5 291 70.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.0e-112 410.6 301 68.1
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.3e-112 410.2 294 68.4
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 5.0e-112 408.3 289 67.5
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 6.6e-112 407.9 291 67.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.1e-111 407.1 291 67.7
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.5e-111 406.8 292 66.8
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.9e-111 406.4 291 67.7
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.5e-111 406.0 292 68.8
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 9.5e-111 404.1 295 66.8
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.8e-110 402.5 293 66.6
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 3.6e-110 402.1 293 68.3
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 3.6e-110 402.1 293 68.6
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 4.7e-110 401.7 295 67.8
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.7e-110 401.7 296 68.2
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 8.1e-110 401.0 293 66.9
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 8.1e-110 401.0 294 67.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 8.1e-110 401.0 292 68.5
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 8.1e-110 401.0 295 67.8
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.1e-109 400.6 293 66.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.1e-109 400.6 293 66.6
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.8e-109 399.8 292 67.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 2.3e-109 399.4 291 69.1
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.1e-109 399.1 289 66.8
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 4.0e-109 398.7 296 66.6
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 5.2e-109 398.3 291 65.6
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 5.2e-109 398.3 292 66.4
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.2e-108 397.1 291 66.0
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.0e-108 396.4 293 65.9
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.6e-108 396.0 307 64.5
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 4.4e-108 395.2 291 66.0
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 4.4e-108 395.2 295 66.8
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.4e-108 395.2 294 66.3
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.8e-108 394.8 291 65.3
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.7e-107 393.3 293 65.5
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.7e-107 393.3 290 65.5
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 3.7e-107 392.1 295 66.4
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.9e-107 391.7 293 66.6
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 4.9e-107 391.7 291 65.6
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.4e-107 391.3 292 65.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 6.4e-107 391.3 291 65.6
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 8.3e-107 391.0 291 65.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 8.3e-107 391.0 291 67.4
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 2.4e-106 389.4 290 64.5
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 3.2e-106 389.0 293 65.9
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 4.1e-106 388.7 294 65.3
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 5.4e-106 388.3 295 64.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 5.4e-106 388.3 245 76.7
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 9.2e-106 387.5 290 64.5
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 1.2e-105 387.1 295 64.7
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 1.2e-105 387.1 294 65.3
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.6e-105 386.7 295 64.4
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.6e-105 386.7 331 60.1
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 4.6e-105 385.2 292 64.7
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 6.0e-105 384.8 290 64.5
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 7.8e-105 384.4 295 64.4
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.0e-104 384.0 295 64.1
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.0e-104 384.0 296 65.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 1.0e-104 384.0 291 62.9
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.3e-104 383.6 289 65.4
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.7e-104 383.3 291 66.3
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.7e-104 383.3 293 65.2
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.7e-104 383.3 296 64.2
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 2.3e-104 382.9 290 63.1
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 3.9e-104 382.1 295 64.1
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 8.6e-104 380.9 295 64.1
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 8.6e-104 380.9 290 63.8
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 1.5e-103 380.2 296 63.5
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.9e-103 379.8 286 64.7
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 3.3e-103 379.0 297 64.0
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 5.6e-103 378.3 290 63.4
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.2e-102 377.1 292 63.7
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.2e-102 377.1 290 64.5
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.7e-102 375.2 290 63.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.4e-101 373.6 289 64.7
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-100 370.5 243 74.1
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 2.6e-100 369.4 289 61.9
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 4.4e-100 368.6 311 61.1
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.4e-98 362.8 291 63.2
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 3.2e-98 362.5 243 72.8
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.9e-96 355.5 231 73.2
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.5e-95 353.6 330 56.1
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.5e-95 353.6 330 56.1
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 5.6e-95 351.7 242 71.5
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 7.3e-95 351.3 237 70.9
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 1.1e-93 347.4 243 67.5
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 5.8e-92 341.7 293 58.4
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 9.9e-92 340.9 296 60.5
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.3e-91 340.5 290 59.7
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.4e-90 337.0 290 57.9
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.6e-89 333.6 292 59.2
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 2.1e-86 323.2 286 58.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.6e-84 316.2 228 71.9
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.3e-83 313.9 281 56.2
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 2.2e-83 313.2 262 58.8
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.8e-83 312.4 234 66.2
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.4e-82 310.5 196 77.0
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 5.6e-79 298.5 246 61.4
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.3e-78 297.4 285 53.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.0e-77 292.4 296 52.7
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 9.9e-76 287.7 284 53.9
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 3.8e-75 285.8 289 52.6
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 3.2e-74 282.7 285 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.6e-70 270.4 212 62.3
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.6e-62 243.8 192 62.5
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 3.6e-57 226.1 175 62.3
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 5.1e-56 222.2 307 45.3
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 2.8e-46 189.9 130 68.5
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 6.5e-43 178.7 227 44.1
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.0e-40 169.9 277 37.2
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.2e-38 161.8 139 61.2
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 3.1e-37 159.8 150 54.7
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.7e-35 154.1 153 52.3
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.1e-34 151.4 150 52.7
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 6.7e-32 142.1 138 53.6
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.5e-31 141.0 113 57.5
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-29 134.4 267 32.2
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 3.2e-26 123.2 82 69.5
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 9.4e-26 121.7 334 28.4
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.3e-24 117.1 109 53.2
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 6.8e-24 115.5 101 59.4
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.7e-22 110.9 122 53.3
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 4.5e-20 102.8 105 53.3
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.2e-17 94.7 171 35.1
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.0e-16 90.1 67 65.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.0e-16 89.7 65 67.7
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 4.0e-16 89.7 109 46.8
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 6.8e-16 89.0 60 68.3
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 4.4e-15 86.3 92 48.9
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 5.7e-15 85.9 57 64.9
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.8e-15 85.1 57 64.9
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.8e-15 85.1 57 64.9
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 2.8e-14 83.6 88 51.1
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 2.8e-14 83.6 88 51.1
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 4.9e-14 82.8 92 48.9
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.9e-14 82.8 57 61.4
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 5.4e-13 79.3 214 30.8
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.0e-13 79.0 56 64.3
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 7.8e-12 75.5 187 31.0
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 3.3e-10 70.1 122 38.5
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 3.6e-09 66.6 66 48.5
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-08 65.1 42 71.4
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 6.8e-08 62.4 47 63.8
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.4e-07 60.1 34 82.4
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 1.7e-06 57.8 47 57.4
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 2.2e-06 57.4 43 62.8


User provided reference genes

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