Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 0.0e+00 1560.0 816 100.0
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 0.0e+00 1088.9 844 73.9
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 6.7e-308 1060.4 838 71.1
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 1.2e-304 1049.7 837 70.4
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 4.1e-297 1024.6 838 68.5
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.2e-296 1023.1 837 69.2
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 3.5e-296 1021.5 838 67.8
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 5.9e-296 1020.8 838 67.8
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 5.9e-296 1020.8 838 67.9
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.2e-295 1018.8 838 67.5
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 8.5e-295 1016.9 838 68.6
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 1.2e-293 1013.1 838 68.4
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 1.6e-293 1012.7 838 67.7
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.7e-293 1011.1 836 67.9
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 4.7e-293 1011.1 836 67.9
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 1.3e-290 1003.0 842 66.5
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 8.3e-290 1000.3 838 67.1
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 2.4e-289 998.8 837 66.7
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 9.2e-289 996.9 837 66.7
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 1.1e-286 989.9 840 66.3
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 3.3e-286 988.4 839 66.5
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 3.3e-286 988.4 837 66.4
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 4.3e-286 988.0 837 68.5
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 4.7e-285 984.6 838 65.6
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 8.0e-285 983.8 837 65.9
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 1.8e-284 982.6 841 65.9
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 5.7e-283 977.6 838 66.6
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 9.8e-283 976.9 839 65.9
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 9.8e-283 976.9 837 65.4
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.3e-282 976.5 765 71.9
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.3e-282 976.5 838 66.0
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.7e-282 976.1 837 65.2
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 1.7e-282 976.1 837 65.2
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 2.9e-282 975.3 838 65.4
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 6.4e-282 974.2 837 65.4
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 6.4e-282 974.2 835 65.9
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 1.4e-281 973.0 838 65.9
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.4e-281 973.0 839 65.3
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 2.4e-281 972.2 839 65.7
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.2e-281 971.8 846 65.0
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 7.0e-281 970.7 840 65.2
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 1.6e-280 969.5 843 64.4
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 1.6e-280 969.5 838 64.9
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 2.7e-280 968.8 805 67.1
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 1.0e-279 966.8 838 65.5
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 1.3e-279 966.5 810 66.3
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 1.3e-279 966.5 837 65.9
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 1.7e-279 966.1 838 65.3
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 1.7e-279 966.1 838 65.3
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 8.6e-279 963.8 841 64.4
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 4.3e-278 961.4 837 64.9
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 5.6e-278 961.1 839 65.6
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 1.2e-277 959.9 837 65.1
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.8e-277 958.7 838 64.8
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 2.8e-277 958.7 838 65.0
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 8.0e-277 957.2 837 64.3
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 2.3e-276 955.7 837 64.8
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 3.1e-276 955.3 839 63.5
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 8.9e-276 953.7 900 61.8
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 1.5e-275 953.0 837 64.5
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.4e-275 951.8 842 64.5
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 5.8e-275 951.0 838 64.9
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.3e-274 949.9 839 64.6
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 2.2e-274 949.1 837 63.9
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 1.1e-273 946.8 843 63.3
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 6.0e-272 941.0 843 64.3
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 8.6e-271 937.2 839 65.2
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 1.1e-270 936.8 838 62.5
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 1.5e-270 936.4 845 63.7
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 5.6e-270 934.5 838 62.3
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 1.2e-269 933.3 842 64.1
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 2.1e-269 932.6 838 62.4
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 4.7e-269 931.4 838 62.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 8.1e-269 930.6 838 62.2
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.1e-268 930.2 838 62.1
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 1.4e-268 929.9 846 63.2
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 5.2e-268 927.9 851 62.5
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 6.8e-268 927.5 828 63.6
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 1.2e-267 926.8 837 62.5
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 2.6e-267 925.6 837 63.2
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 4.4e-267 924.9 839 64.4
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 1.3e-266 923.3 842 63.2
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 1.7e-266 922.9 836 64.2
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 2.9e-266 922.2 839 63.9
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.3e-266 920.6 837 63.0
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.1e-265 920.2 839 62.1
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 2.4e-265 919.1 845 61.2
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 4.1e-265 918.3 844 62.2
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 2.1e-264 916.0 838 61.0
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.7e-263 912.9 839 62.2
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 1.1e-262 910.2 828 62.1
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 1.1e-262 910.2 838 61.2
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.1e-262 910.2 838 61.0
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 4.3e-262 908.3 838 60.9
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 5.6e-262 907.9 850 62.4
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 1.1e-260 903.7 837 60.9
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 3.4e-259 898.7 857 59.9
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 5.8e-259 897.9 838 60.4
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 2.9e-258 895.6 839 60.7
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 4.9e-258 894.8 839 60.5
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 5.4e-257 891.3 840 60.6
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 1.2e-256 890.2 840 60.5
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 4.6e-256 888.3 815 62.1
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 1.3e-255 886.7 839 60.1
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.7e-255 886.3 839 60.1
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.6e-253 879.8 839 60.3
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 1.4e-249 866.7 835 61.7
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 2.1e-248 862.8 941 55.7
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 4.0e-244 848.6 1141 48.6
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 8.4e-242 840.9 773 62.1
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.2e-241 839.0 777 61.5
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.3e-234 817.0 770 59.6
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 5.3e-228 795.0 773 59.8
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 3.4e-227 792.3 758 59.2
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 2.2e-213 746.5 531 75.3
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 4.1e-212 742.3 813 55.2
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 2.1e-208 729.9 538 73.0
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 2.2e-202 709.9 653 62.5
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 4.2e-201 705.7 494 78.7
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 9.4e-201 704.5 531 73.4
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 2.6e-190 669.8 582 64.9
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 6.3e-189 665.2 768 50.5
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 1.6e-184 650.6 760 50.8
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 6.1e-184 648.7 779 50.1
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 7.7e-179 631.7 583 63.0
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 1.3e-178 630.9 773 49.4
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 2.0e-158 563.9 522 62.5
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 3.5e-123 446.8 531 52.7
Haze_10320 Corylus avellana HOM05D002370 ORTHO05D003878 4.0e-119 433.3 293 77.8
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 9.0e-119 432.2 552 50.9
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 4.6e-107 393.3 924 32.4
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 1.3e-106 391.7 800 35.8
CAN.G411.104 Capsicum annuum HOM05D002370 ORTHO05D003878 7.6e-102 375.9 271 75.6
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 1.1e-100 372.1 781 34.7
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 3.3e-97 360.5 326 62.6
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 7.7e-94 349.4 878 31.5
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.1e-92 345.5 299 63.5
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.2e-86 325.5 251 69.7
CAN.G411.96 Capsicum annuum HOM05D002370 ORTHO05D003878 6.3e-80 303.1 242 68.2
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.5e-76 292.0 396 47.0
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 5.7e-73 280.0 211 70.1
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 2.8e-72 277.7 756 30.7
Haze_10318 Corylus avellana HOM05D002370 ORTHO05D003878 1.0e-66 259.2 160 83.8
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 1.4e-66 258.8 210 67.1
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 4.4e-65 253.8 217 66.4
CAN.G289.58 Capsicum annuum HOM05D002370 ORTHO05D003878 1.3e-64 252.3 210 66.7
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 2.4e-63 248.1 222 62.2
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 2.3e-58 231.5 210 62.4
Thhalv10012207m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 2.3e-50 204.9 266 48.5
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.1e-47 194.1 112 86.6
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.5e-44 185.7 260 48.5
Actinidia17531 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.6e-43 182.2 157 66.9
QL06p036987 Quercus lobata HOM05D002370 ORTHO05D003878 2.2e-40 171.8 155 63.9
Thecc.01G281900 Theobroma cacao HOM05D002370 ORTHO05D037785 2.4e-39 168.3 126 73.8
Thecc.06G048300 Theobroma cacao HOM05D002370 ORTHO05D037785 1.6e-38 165.6 141 66.7
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 4.6e-38 164.1 210 49.5
MBI03_g18482_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D003878 3.3e-36 157.9 155 58.7
QL05p028983 Quercus lobata HOM05D002370 ORTHO05D003878 5.6e-36 157.1 112 72.3
CAN.G12816.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.2e-35 156.0 150 60.7
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 9.5e-28 129.8 615 23.1
MBI03_g18483_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 2.1e-27 128.6 138 55.1
MBI04_g33444_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 2.1e-27 128.6 134 56.7
MBI18_g33401_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 6.2e-27 127.1 138 54.3
MBI08_g05568_MAGBIO Magnolia biondii HOM05D001673 ORTHO05D012924 1.4e-26 125.9 142 52.8
MBI04_g11121_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D015148 4.2e-23 114.4 137 49.6
Lsat_1_v5_gn_4_117661 Lactuca sativa HOM05D000964 ORTHO05D001488 9.2e-23 113.2 78 78.2
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.3e-21 109.4 64 85.9
FAN15G0843 Fragaria x ananassa HOM05D002370 ORTHO05D003878 1.2e-19 102.8 68 76.5
PSO017G1105 Papaver somniferum HOM05D000352 ORTHO05D000260 1.6e-19 102.4 111 55.0
TAR381G0014 Trochodendron aralioides HOM05D002370 ORTHO05D414920 1.2e-17 96.3 226 35.8
MBI04_g22054_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D012924 4.4e-17 94.4 162 40.7
MBI19_g14019_MAGBIO Magnolia biondii HOM05D002370 ORTHO05D003878 2.9e-16 91.7 117 47.9
CAN.G9920.1 Capsicum annuum HOM05D002370 ORTHO05D005166 3.5e-14 84.7 83 53.0
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 7.8e-14 83.6 113 45.1
Thecc.08G169400 Theobroma cacao HOM05D002370 ORTHO05D037785 1.5e-12 79.3 120 45.0
MBI08_g24353_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 1.3e-11 76.3 52 73.1
MBI11_g41494_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D012924 1.3e-11 76.3 53 69.8
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 6.2e-11 73.9 47 76.6
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.5e-09 69.3 41 85.4
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 1.4e-07 62.8 34 85.3
Lsat_1_v5_gn_7_60880 Lactuca sativa HOM05D002313 ORTHO05D229995 1.2e-06 59.7 41 70.7


User provided reference genes

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