Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01918 Vaccinium macrocarpon HOM05D008183 ORTHO05D007254 1.6e-129 466.1 238 100.0
vmacro16169 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 3.0e-22 109.8 78 69.2
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.4e-19 100.1 120 44.2
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.1e-19 99.8 124 41.9
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.1e-19 99.8 124 41.9
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.0e-19 99.4 124 41.1
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.3e-19 99.0 124 41.9
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.5e-18 97.4 107 45.8
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 1.5e-18 97.4 159 36.5
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.6e-18 95.1 104 46.2
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.3e-17 94.4 104 45.2
vmacro01921 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 8.4e-17 91.7 82 59.8
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 8.7e-14 81.6 87 47.1
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.9e-13 80.5 71 54.9
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.9e-13 80.5 88 43.2
Actinidia02390 Actinidia chinensis HOM05D000005 ORTHO05D000012 5.6e-13 79.0 85 52.9
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 1.6e-12 77.4 174 34.5
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.4e-11 73.6 84 46.4
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 3.4e-10 69.7 95 42.1
CSS0022461 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.3e-09 67.8 104 40.4
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 1.3e-09 67.8 81 45.7
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.2e-09 67.0 69 53.6
Actinidia00144 Actinidia chinensis HOM05D000005 ORTHO05D000012 8.4e-09 65.1 98 41.8
Rhsim12G0201300 Rhododendron simsii HOM05D002908 ORTHO05D009379 1.4e-08 64.3 79 41.8
PGSC0003DMG400002799 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.4e-08 64.3 87 37.9
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-08 63.9 84 46.4
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.5e-08 63.5 73 43.8
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.5e-08 63.5 69 49.3
Sopen01g044060 Solanum pennellii HOM05D000005 ORTHO05D000012 2.5e-08 63.5 87 39.1
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 2.5e-08 63.5 66 51.5
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.2e-08 62.8 74 50.0
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 4.2e-08 62.8 76 50.0
MD08G1019000 Malus domestica HOM05D000005 ORTHO05D000012 4.2e-08 62.8 91 35.2
Prupe.2G135700 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-08 62.8 93 33.3
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.2e-08 62.8 69 49.3
Lj8P205T42 Lonicera japonica HOM05D008183 ORTHO05D007254 7.1e-08 62.0 101 35.6
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 1.2e-07 61.2 101 34.7
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-07 61.2 69 49.3
MD02G1302100 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-07 60.8 91 37.4
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.6e-07 60.8 68 47.1
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.6e-07 60.8 68 47.1
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 2.1e-07 60.5 91 40.7
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.1e-07 60.5 124 31.5
CSS0049718 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.7e-07 60.1 92 37.0
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.5e-07 59.7 71 46.5
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.5e-07 59.7 71 46.5
FAN26G0743 Fragaria x ananassa HOM05D000009 ORTHO05D000008 3.5e-07 59.7 83 42.2
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 3.5e-07 59.7 81 42.0
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 3.5e-07 59.7 109 36.7
Hma1.2p1_0812F.1_g222290 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 4.6e-07 59.3 91 37.4
CAN.G1076.17 Capsicum annuum HOM05D000005 ORTHO05D000012 6.0e-07 58.9 99 36.4
FvH4_1g01230 Fragaria vesca HOM05D000009 ORTHO05D000008 6.0e-07 58.9 88 40.9
FAN19G2548 Fragaria x ananassa HOM05D000009 ORTHO05D000008 6.0e-07 58.9 88 40.9
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 6.0e-07 58.9 76 42.1
MD08G1019900 Malus domestica HOM05D000005 ORTHO05D000012 6.0e-07 58.9 91 34.1
Prupe.2G126400 Prunus persica HOM05D000005 ORTHO05D000012 1.0e-06 58.2 91 38.5
RcHm_v2.0_Chr1g0348321 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-06 57.8 85 36.5
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-06 57.4 69 43.5
Lju225C5T9 Lonicera japonica HOM05D008183 ORTHO05D007254 1.8e-06 57.4 71 45.1
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.3e-06 57.0 102 38.2
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.3e-06 57.0 67 41.8
RcHm_v2.0_Chr1g0348421 Rosa chinensis HOM05D000005 ORTHO05D000012 2.3e-06 57.0 91 35.2
vmacro01858 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 2.3e-06 57.0 77 48.1
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.0e-06 56.6 71 43.7
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.0e-06 56.6 69 47.8
RcHm_v2.0_Chr1g0327301 Rosa chinensis HOM05D000009 ORTHO05D000008 3.0e-06 56.6 69 42.0
RcHm_v2.0_Chr1g0348311 Rosa chinensis HOM05D000005 ORTHO05D000012 3.0e-06 56.6 91 33.0
Sopen11g008710 Solanum pennellii HOM05D000005 ORTHO05D000012 3.0e-06 56.6 91 33.0
vmacro01877 Vaccinium macrocarpon HOM05D000101 ORTHO05D000089 3.9e-06 56.2 47 61.7
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.1e-06 55.8 73 41.1
FAN23G1399 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.1e-06 55.8 94 36.2
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 5.1e-06 55.8 99 36.4
MD02G1264800 Malus domestica HOM05D000005 ORTHO05D000012 5.1e-06 55.8 91 36.3
RcHm_v2.0_Chr1g0336831 Rosa chinensis HOM05D000009 ORTHO05D000008 5.1e-06 55.8 69 43.5
RcHm_v2.0_Chr1g0346831 Rosa chinensis HOM05D000005 ORTHO05D000012 5.1e-06 55.8 93 33.3
Lsat_1_v5_gn_6_74641 Lactuca sativa HOM05D000005 ORTHO05D000012 6.7e-06 55.5 89 34.8
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 6.7e-06 55.5 59 54.2
RcHm_v2.0_Chr1g0348431 Rosa chinensis HOM05D000005 ORTHO05D000012 6.7e-06 55.5 91 36.3
Solyc01g113620.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 6.7e-06 55.5 87 37.9
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.7e-06 55.1 97 35.1
COL.COLO4_15019 Corchorus olitorius HOM05D000003 ORTHO05D000004 8.7e-06 55.1 100 35.0
FAN03G1873 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.7e-06 55.1 85 36.5
FAN03G2198 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.7e-06 55.1 91 35.2
FAN06G2906 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.7e-06 55.1 85 37.6
MD07G1102200 Malus domestica HOM05D000005 ORTHO05D000012 8.7e-06 55.1 70 45.7
Potri.019G019053 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.7e-06 55.1 85 35.3
RcHm_v2.0_Chr1g0348371 Rosa chinensis HOM05D000005 ORTHO05D000012 8.7e-06 55.1 74 43.2
PGSC0003DMG400013090 Solanum tuberosum HOM05D000005 ORTHO05D000012 8.7e-06 55.1 92 37.0


User provided reference genes

Program Settings