Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 1.5e-264 915.6 469 100.0
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 1.1e-158 563.9 471 67.9
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 2.5e-158 562.8 471 68.2
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 8.0e-128 461.5 464 58.0
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 4.1e-116 422.5 460 57.0
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 4.5e-107 392.5 390 57.7
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 1.1e-105 387.9 358 58.9
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 7.2e-105 385.2 464 50.0
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 7.2e-105 385.2 465 50.1
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 1.2e-104 384.4 464 49.1
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 1.6e-104 384.0 354 59.6
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 6.1e-104 382.1 413 55.0
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 8.0e-104 381.7 374 58.6
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 1.8e-103 380.6 460 50.9
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 4.0e-103 379.4 401 55.4
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 5.2e-103 379.0 394 55.3
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 1.2e-102 377.9 424 53.3
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 1.5e-102 377.5 404 54.7
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 3.4e-102 376.3 409 54.8
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 7.5e-102 375.2 436 50.0
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 1.7e-101 374.0 380 55.0
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 2.8e-101 373.2 409 53.5
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 4.9e-101 372.5 409 53.3
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 4.9e-101 372.5 394 55.1
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 8.3e-101 371.7 380 55.0
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 1.1e-100 371.3 465 50.1
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 1.1e-100 371.3 392 55.6
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 1.4e-100 370.9 380 55.5
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 1.8e-100 370.5 353 61.2
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 1.8e-100 370.5 380 54.7
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 1.8e-100 370.5 379 53.8
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 3.2e-100 369.8 413 54.5
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 7.0e-100 368.6 404 53.7
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 9.2e-100 368.2 413 51.6
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 3.5e-99 366.3 389 53.0
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 4.5e-99 365.9 392 54.1
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 4.5e-99 365.9 380 53.7
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 1.3e-98 364.4 410 51.7
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 1.7e-98 364.0 404 53.7
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 1.7e-98 364.0 425 52.0
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 5.0e-98 362.5 415 52.3
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 1.1e-97 361.3 460 50.4
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 1.1e-97 361.3 344 56.7
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 1.5e-97 360.9 356 57.9
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 4.3e-97 359.4 465 48.8
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 8.0e-96 355.1 465 45.8
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 8.0e-96 355.1 392 51.5
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 1.0e-95 354.8 406 51.5
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 1.8e-95 354.0 372 56.2
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 3.1e-95 353.2 464 48.3
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 3.1e-95 353.2 402 52.7
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 5.2e-95 352.4 459 46.6
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 5.2e-95 352.4 401 51.4
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 6.8e-95 352.1 403 51.4
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 1.2e-94 351.3 413 52.3
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 4.4e-94 349.4 351 56.1
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 7.5e-94 348.6 351 56.1
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 1.3e-93 347.8 356 56.7
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.7e-93 347.4 379 53.3
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 2.9e-93 346.7 458 48.3
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 4.9e-93 345.9 369 52.6
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 6.4e-93 345.5 355 54.6
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 6.4e-93 345.5 387 53.5
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 6.4e-93 345.5 358 55.0
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 9.2e-92 341.7 350 56.9
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 6.0e-91 339.0 356 55.6
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 6.0e-91 339.0 351 53.6
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 1.0e-90 338.2 379 53.8
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.3e-90 337.8 459 47.5
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 3.0e-90 336.7 356 55.3
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 3.9e-90 336.3 489 45.2
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 1.1e-89 334.7 349 53.6
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 1.9e-89 334.0 398 50.0
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 2.5e-89 333.6 380 54.2
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 7.3e-89 332.0 350 55.7
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 1.2e-88 331.3 356 55.3
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 3.6e-88 329.7 380 53.9
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 8.0e-88 328.6 350 54.3
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 1.1e-87 328.2 350 55.1
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 4.4e-86 322.8 327 56.6
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 1.3e-85 321.2 463 46.0
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.7e-85 320.9 389 50.9
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 2.9e-85 320.1 347 51.9
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.1e-84 318.2 363 52.1
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 6.0e-83 312.4 325 54.5
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 6.0e-83 312.4 334 53.6
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 1.5e-81 307.8 392 47.2
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 1.9e-81 307.4 432 46.3
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 4.0e-79 299.7 382 48.4
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 3.5e-75 286.6 341 50.4
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 2.3e-74 283.9 324 51.2
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 1.1e-73 281.6 368 46.7
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 3.3e-73 280.0 376 46.5
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 2.4e-71 273.9 358 44.4
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 2.4e-71 273.9 352 44.9
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 8.9e-71 271.9 295 53.9
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 1.1e-68 265.0 354 47.5
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 5.4e-68 262.7 324 50.3
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 7.8e-67 258.8 355 45.6
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 8.7e-66 255.4 370 43.8
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 4.0e-63 246.5 329 44.1
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 1.2e-62 245.0 372 41.7
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 1.0e-58 231.9 371 43.7
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 1.8e-55 221.1 378 39.9
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 1.3e-53 214.9 378 39.7
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 4.9e-53 213.0 273 48.0
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 1.3e-50 204.9 240 52.5
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 3.3e-49 200.3 274 48.5
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 5.8e-46 189.5 322 40.7
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 2.5e-44 184.1 256 43.8
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 1.8e-42 177.9 344 37.8
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 5.1e-42 176.4 128 68.0
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 8.7e-42 175.6 137 63.5
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 1.1e-41 175.3 317 36.9
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 2.2e-32 144.4 100 70.0
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 2.2e-32 144.4 100 70.0
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.4e-31 141.0 352 34.4
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 7.9e-27 125.9 98 66.3
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 7.9e-27 125.9 98 66.3
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 5.1e-26 123.2 98 65.3
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 7.4e-25 119.4 94 61.7
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 2.8e-24 117.5 109 60.6
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 1.8e-23 114.8 90 62.2
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 3.3e-17 94.0 96 58.3
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 7.7e-14 82.8 79 58.2
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 3.8e-13 80.5 51 74.5
Eucgr.G00935 Eucalyptus grandis HOM05D006342 ORTHO05D008155 8.8e-10 69.3 137 39.4


User provided reference genes

Program Settings