Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 0.0e+00 1179.9 572 100.0
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 2.9e-265 918.3 572 79.7
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 2.5e-256 888.6 576 76.2
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 4.2e-256 887.9 576 76.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.7e-247 858.6 572 74.3
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 5.5e-232 807.7 572 69.9
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.6e-231 806.2 572 69.6
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 6.1e-231 804.3 574 70.2
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.3e-230 802.4 573 69.1
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 3.0e-230 802.0 573 69.3
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.2e-229 800.0 572 69.4
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 9.7e-229 797.0 572 69.9
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 8.2e-228 793.9 572 68.5
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 8.2e-228 793.9 572 69.4
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 7.0e-227 790.8 572 67.7
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.2e-226 790.0 572 68.4
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 2.7e-226 788.9 572 69.6
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 3.8e-225 785.0 572 68.2
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 3.8e-225 785.0 572 68.0
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.5e-224 783.1 572 67.5
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.5e-224 783.1 572 68.0
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.5e-224 783.1 572 68.7
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 2.5e-224 782.3 572 68.0
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.2e-224 781.9 573 69.5
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 4.2e-224 781.6 572 67.5
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 7.2e-224 780.8 627 64.3
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.2e-223 780.0 573 68.2
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.6e-223 779.6 572 67.7
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 3.6e-223 778.5 572 67.0
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.7e-223 778.1 572 68.0
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 8.0e-223 777.3 572 67.0
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.4e-222 776.5 573 67.5
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 1.8e-222 776.2 572 67.0
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 2.3e-222 775.8 572 67.3
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 4.0e-222 775.0 573 67.9
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-222 775.0 572 66.4
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.2e-222 774.6 572 66.4
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 5.2e-222 774.6 572 67.8
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 6.8e-222 774.2 587 67.8
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.5e-221 773.1 572 66.3
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.5e-221 773.1 572 67.1
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 3.4e-221 771.9 572 66.8
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 4.4e-221 771.5 575 66.8
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 5.7e-221 771.2 572 66.1
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 7.5e-221 770.8 573 67.4
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 9.8e-221 770.4 572 67.3
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.2e-220 769.2 564 67.4
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 2.2e-220 769.2 572 67.0
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.8e-220 768.8 572 66.1
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 8.3e-220 767.3 572 67.7
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.4e-219 766.5 572 66.1
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.4e-219 766.5 572 66.4
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.6e-218 763.1 572 67.1
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 2.0e-218 762.7 573 65.8
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.0e-217 760.4 572 66.3
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.0e-217 760.4 572 65.4
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.0e-217 760.4 572 66.3
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 2.9e-217 758.8 578 66.8
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 6.6e-217 757.7 575 67.1
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 3.3e-216 755.4 572 65.7
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 4.2e-216 755.0 572 65.6
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 4.2e-216 755.0 573 66.3
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.2e-215 753.4 572 66.1
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 2.1e-215 752.7 572 65.6
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 3.6e-215 751.9 573 66.5
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.7e-215 751.5 560 66.8
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.0e-214 750.4 572 65.4
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.8e-214 749.6 550 68.7
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 3.0e-214 748.8 573 65.8
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 6.8e-214 747.7 574 64.5
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 2.0e-213 746.1 572 65.0
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 2.6e-213 745.7 572 65.7
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 3.7e-212 741.9 574 65.3
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 1.8e-211 739.6 578 64.9
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.8e-211 739.6 615 61.8
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 8.6e-209 730.7 574 65.0
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.6e-208 728.0 561 65.2
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 4.0e-206 721.8 575 62.8
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 5.2e-206 721.5 574 63.1
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.2e-205 720.3 573 63.5
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.5e-205 719.9 575 62.8
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.5e-205 719.9 453 76.8
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 2.0e-205 719.5 572 65.2
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 2.6e-205 719.2 572 62.9
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 5.8e-205 718.0 575 62.4
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 7.5e-205 717.6 572 62.8
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 2.2e-204 716.1 620 60.6
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 4.1e-203 711.8 572 62.6
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.2e-202 710.3 572 61.9
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 2.0e-202 709.5 572 62.4
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 2.7e-202 709.1 645 58.4
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 6.0e-202 708.0 572 61.7
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 7.8e-202 707.6 572 62.6
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 3.0e-201 705.7 573 61.6
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 3.9e-201 705.3 572 61.4
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 3.9e-201 705.3 572 61.4
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 5.0e-201 704.9 455 75.6
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.1e-200 703.7 573 61.6
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 1.1e-200 703.7 572 61.9
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 7.3e-200 701.0 572 61.2
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.3e-193 680.2 629 56.6
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 5.1e-193 678.3 575 60.3
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.5e-192 676.8 572 60.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.2e-191 673.7 572 60.5
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.3e-184 648.7 540 61.9
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.8e-180 635.6 415 74.7
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 6.6e-177 624.8 453 67.3
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.5e-176 622.9 519 60.7
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 5.4e-171 605.1 401 72.8
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 2.1e-170 603.2 576 53.5
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.1e-168 597.4 577 54.1
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 2.1e-167 593.2 584 51.4
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.6e-165 584.7 368 78.3
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 4.9e-164 582.0 461 62.7
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 9.3e-163 577.8 461 62.5
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.5e-157 560.5 430 65.6
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 5.5e-155 552.0 368 74.2
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.0e-153 547.7 368 71.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 7.6e-149 531.6 611 47.0
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 7.9e-146 521.5 369 70.5
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.2e-139 499.6 404 63.6
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 4.2e-139 499.2 402 62.4
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.0e-137 494.6 375 66.4
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-137 494.2 366 67.2
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.1e-134 483.0 358 67.3
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 8.5e-124 448.4 369 62.3
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.4e-104 382.9 233 77.3
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 6.6e-92 342.4 535 37.4
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.2e-88 331.6 460 40.2
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.7e-87 327.8 251 65.3
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 2.0e-85 320.9 279 57.0
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 8.9e-81 305.4 523 37.1
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.1e-78 298.5 187 75.9
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.4e-78 296.2 170 82.4
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.4e-78 296.2 170 82.4
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-75 287.3 170 81.2
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.4e-62 245.0 186 64.5
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 4.0e-49 200.3 515 29.3
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.0e-45 186.4 106 83.0
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.3e-44 185.3 106 81.1
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.5e-43 181.8 105 83.8
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.6e-42 178.3 93 89.2
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 6.0e-37 159.8 119 66.4
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 1.1e-35 155.6 190 43.2
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.1e-34 151.4 91 76.9
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 5.7e-27 126.7 86 69.8
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.2e-24 119.0 67 82.1
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.1e-20 103.6 76 63.2
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.1e-17 94.0 65 63.1
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.2e-16 92.4 70 67.1
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 7.7e-16 89.7 69 65.2
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 6.1e-13 80.1 122 41.0


User provided reference genes

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