Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 5.5e-246 854.0 467 100.0
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.3e-190 668.3 428 86.4
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.4e-187 658.3 441 84.1
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 7.1e-177 624.4 417 80.3
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 5.4e-169 598.2 437 73.0
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.8e-156 556.6 438 68.7
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 3.2e-153 545.8 440 66.6
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 5.4e-153 545.0 437 66.1
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.0e-148 527.7 329 88.4
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 5.5e-145 518.5 438 63.0
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 6.0e-144 515.0 437 66.8
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.6e-141 506.9 438 61.4
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 6.5e-138 495.0 437 63.2
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.4e-137 493.8 452 61.5
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 7.1e-137 491.5 437 63.4
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 6.1e-136 488.4 545 52.7
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 6.1e-136 488.4 438 63.2
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 3.0e-135 486.1 437 59.7
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 3.9e-135 485.7 437 60.9
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 5.1e-135 485.3 440 59.8
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.5e-134 483.0 438 60.0
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 3.3e-134 482.6 398 65.1
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 6.3e-133 478.4 376 68.1
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 4.1e-132 475.7 437 61.1
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.5e-131 473.8 437 58.8
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 2.0e-131 473.4 442 59.0
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.0e-131 473.4 437 59.0
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.0e-130 471.1 446 59.0
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 7.2e-129 464.9 438 58.4
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.2e-128 464.2 473 55.6
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 6.1e-128 461.8 438 60.3
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.8e-127 460.3 438 57.1
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 3.0e-127 459.5 436 60.1
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 2.5e-126 456.4 435 58.4
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.3e-125 454.1 428 58.9
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 1.8e-124 450.3 437 57.2
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.4e-123 446.0 424 56.8
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.4e-123 446.0 424 56.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 5.9e-123 445.3 425 56.9
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.7e-122 443.7 439 56.7
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.1e-121 441.0 439 54.9
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 5.5e-121 438.7 438 56.6
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.5e-121 438.7 436 55.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 5.5e-121 438.7 448 51.3
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.1e-120 436.8 446 55.6
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.1e-120 436.8 439 55.6
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 3.6e-120 436.0 435 53.6
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 7.9e-120 434.9 437 56.1
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.8e-119 433.7 435 54.0
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.8e-119 433.7 437 54.0
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 3.9e-119 432.6 436 53.9
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 6.7e-119 431.8 438 55.5
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.1e-118 431.0 438 54.1
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.1e-118 431.0 437 52.6
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 5.7e-118 428.7 443 54.9
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.7e-117 427.2 436 54.6
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.8e-117 426.4 438 55.9
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 3.7e-117 426.0 438 53.9
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 4.1e-116 422.5 437 54.0
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 5.3e-116 422.2 437 54.9
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 3.5e-115 419.5 470 50.6
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 4.5e-115 419.1 437 54.7
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 3.8e-114 416.0 592 45.3
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 5.0e-114 415.6 437 52.9
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 4.2e-113 412.5 445 53.3
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 4.2e-113 412.5 447 53.2
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 1.6e-112 410.6 436 53.0
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 6.1e-112 408.7 445 52.4
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 8.0e-112 408.3 369 60.7
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.8e-111 407.1 441 52.6
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 3.0e-111 406.4 439 54.2
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 5.2e-111 405.6 454 51.8
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 5.2e-111 405.6 454 52.0
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 5.2e-111 405.6 454 51.8
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 6.7e-111 405.2 436 52.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.1e-108 397.9 441 53.7
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.4e-108 396.7 446 51.6
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 7.0e-108 395.2 438 51.1
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 2.0e-107 393.7 468 50.2
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.5e-107 392.5 458 50.0
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 4.5e-107 392.5 416 54.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 7.7e-107 391.7 430 52.1
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.8e-106 389.4 463 49.7
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 5.0e-106 389.0 496 48.0
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 2.7e-104 383.3 444 53.8
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.8e-103 378.3 446 50.0
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 7.5e-102 375.2 438 49.8
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 9.8e-102 374.8 303 64.4
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 4.1e-100 369.4 438 49.1
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 7.7e-99 365.2 428 48.8
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.3e-98 364.4 436 47.7
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.3e-98 364.4 438 50.0
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 5.0e-98 362.5 444 47.1
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 8.5e-98 361.7 436 47.7
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 3.2e-97 359.8 463 47.3
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.2e-95 352.4 416 49.5
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 6.8e-95 352.1 440 49.1
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 5.7e-94 349.0 423 48.0
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 7.5e-94 348.6 444 46.4
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 7.0e-92 342.0 446 48.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 5.9e-91 339.0 428 47.0
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 6.6e-90 335.5 457 45.5
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-89 334.3 413 53.0
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 7.2e-89 332.0 344 56.7
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 3.0e-87 326.6 247 66.8
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 5.2e-87 325.9 352 51.7
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 1.2e-86 324.7 387 50.6
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.0e-86 323.9 324 53.4
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.2e-83 314.7 388 46.4
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 6.4e-77 292.4 438 40.0
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 4.1e-76 289.7 348 51.4
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 5.4e-76 289.3 287 54.7
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 8.6e-74 282.0 416 44.7
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.8e-71 274.2 230 64.3
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.5e-70 271.2 609 32.7
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 4.4e-70 269.6 469 39.4
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 9.8e-70 268.5 307 52.4
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 3.7e-69 266.5 442 40.3
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 7.3e-65 252.3 441 36.5
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.2e-64 251.5 220 59.1
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 3.7e-61 240.0 265 49.8
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.4e-60 236.1 206 57.3
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.7e-59 233.8 441 34.2
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 2.8e-56 223.8 220 58.2
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 2.7e-51 207.2 340 37.9
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.2e-46 191.8 178 61.8
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 2.9e-45 187.2 206 49.0
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 2.4e-44 184.1 436 31.9
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 6.2e-40 169.5 216 50.0
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.5e-38 164.9 204 45.1
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.0e-38 164.5 391 33.8
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.8e-34 151.4 424 30.0
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 4.8e-32 143.3 409 27.9
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 2.4e-31 141.0 158 48.7
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.8e-30 136.3 431 32.9
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.4e-29 132.5 99 68.7
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.6e-27 128.3 76 78.9
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 3.0e-26 124.0 250 32.8
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-25 122.1 155 49.0
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.1e-25 122.1 149 46.3
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 2.5e-25 120.9 99 55.6
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 4.3e-25 120.2 115 60.9
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.8e-24 117.5 136 53.7
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 2.9e-21 107.5 210 36.2
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 3.8e-21 107.1 81 69.1
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 2.8e-16 90.9 95 54.7
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-15 89.0 74 62.2
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 1.4e-12 78.6 66 60.6
Actinidia39037 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.6e-11 73.9 84 48.8
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 3.9e-10 70.5 84 39.3
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.1e-09 68.9 68 55.9
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 1.1e-09 68.9 446 23.5
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.1e-09 68.9 66 60.6
PRCOL_00002550 Prasinoderma coloniale HOM05D004546 ORTHO05D005419 2.8e-08 64.3 181 27.1
SMO118G0303 Selaginella moellendorffii HOM05D044143 ORTHO05D050877 1.8e-07 61.6 224 27.7
Actinidia39035 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.1e-07 60.8 53 60.4
arahy.Tifrunner.gnm1.ann1.MTQ0B2 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.5e-06 58.5 103 37.9
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 1.5e-06 58.5 442 23.3
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 1.5e-06 58.5 138 27.5


User provided reference genes

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