Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.3e-142 508.8 250 100.0
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 5.4e-131 471.1 245 93.5
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 2.0e-125 452.6 250 86.8
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.3e-121 439.9 243 87.2
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.3e-121 439.1 248 84.3
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 2.3e-121 439.1 250 84.0
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.9e-121 438.7 250 85.6
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.1e-120 436.8 250 83.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.1e-120 436.8 250 83.6
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 4.3e-120 434.9 250 83.2
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 7.3e-120 434.1 247 83.8
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 9.5e-120 433.7 251 83.3
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 2.8e-119 432.2 250 82.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 3.6e-119 431.8 250 84.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 8.0e-119 430.6 250 82.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.4e-118 429.9 250 82.4
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.4e-118 429.9 250 82.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.8e-118 429.5 251 82.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.3e-118 429.1 250 82.0
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 3.0e-118 428.7 250 83.2
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 3.0e-118 428.7 250 82.4
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 4.0e-118 428.3 250 81.2
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.0e-118 428.3 250 83.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 5.2e-118 427.9 250 81.6
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 6.8e-118 427.6 250 81.6
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 6.8e-118 427.6 248 83.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 8.9e-118 427.2 250 82.4
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.2e-117 426.8 250 82.4
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.5e-117 426.4 250 81.6
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.5e-117 426.4 247 83.4
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.5e-117 426.4 247 81.8
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 2.6e-117 425.6 252 81.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.4e-117 425.2 249 82.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.5e-117 424.1 250 80.4
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 9.8e-117 423.7 248 81.5
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.3e-116 423.3 224 90.6
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.7e-116 422.9 251 81.3
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-116 422.9 248 81.5
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.7e-116 422.9 248 81.5
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.9e-116 422.2 250 79.6
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 3.7e-116 421.8 250 81.2
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.9e-116 421.4 250 80.0
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.9e-116 421.4 250 80.0
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.4e-116 421.0 247 81.4
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 6.4e-116 421.0 248 81.0
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 8.3e-116 420.6 242 82.6
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 8.3e-116 420.6 250 80.8
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.4e-115 419.9 250 80.8
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.4e-115 419.1 252 80.2
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.4e-115 419.1 248 81.9
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 3.2e-115 418.7 250 80.4
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.7e-114 415.6 250 80.0
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.5e-114 415.2 261 77.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.5e-114 415.2 248 80.6
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 5.9e-114 414.5 245 80.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 7.8e-114 414.1 250 79.2
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.0e-113 413.7 250 79.6
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.0e-113 413.7 250 79.6
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.0e-113 413.7 250 80.0
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.3e-113 412.5 250 78.8
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.0e-113 412.1 250 78.8
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 3.0e-113 412.1 247 79.4
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 3.9e-113 411.8 247 78.9
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.9e-113 411.8 250 79.2
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 8.6e-113 410.6 247 78.9
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 8.6e-113 410.6 248 78.6
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.1e-112 410.2 250 79.2
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.1e-112 410.2 250 79.2
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.5e-112 409.8 248 78.2
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-112 409.5 261 77.0
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.9e-112 409.5 250 78.8
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 3.3e-112 408.7 248 79.0
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 3.3e-112 408.7 248 78.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 5.6e-112 407.9 245 80.0
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 7.3e-112 407.5 247 78.9
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 7.3e-112 407.5 241 80.9
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 7.3e-112 407.5 250 75.6
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 9.5e-112 407.1 249 77.1
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.2e-111 406.8 231 83.5
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.6e-111 406.4 248 78.2
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.6e-111 406.4 247 77.7
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.8e-111 405.6 247 78.1
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 4.7e-111 404.8 248 77.0
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.0e-110 403.7 247 76.5
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.4e-110 403.3 247 76.5
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 3.1e-110 402.1 242 79.3
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 4.0e-110 401.7 248 76.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 8.9e-110 400.6 250 80.0
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.2e-109 400.2 245 78.4
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 7.5e-109 397.5 248 78.6
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 9.8e-109 397.1 241 80.1
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 9.8e-109 397.1 241 80.1
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.3e-108 396.7 290 68.3
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.6e-106 389.8 290 69.0
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 7.8e-106 387.5 247 75.3
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.3e-105 386.0 242 74.8
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 6.6e-105 384.4 237 80.6
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 4.3e-104 381.7 248 73.4
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 6.2e-103 377.9 248 72.6
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 5.2e-102 374.8 251 70.9
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.3e-100 370.2 253 69.2
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.7e-98 362.5 250 72.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.7e-98 362.5 255 68.2
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 6.8e-94 347.8 242 68.6
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 7.3e-88 327.8 198 79.3
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 3.3e-80 302.4 228 63.6
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.1e-79 299.7 236 66.5
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 5.4e-75 285.0 229 63.3
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 7.1e-75 284.6 248 58.9
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.3e-73 280.4 250 59.2
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 3.0e-73 279.3 251 61.0
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.6e-66 256.9 173 70.5
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 7.9e-66 254.6 149 78.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 8.7e-65 251.1 136 87.5
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.6e-63 246.9 134 85.8
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 7.6e-61 238.0 244 51.2
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.9e-59 233.4 235 51.9
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 2.5e-56 223.0 130 80.0
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.0e-52 211.1 198 52.5
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 3.3e-40 169.5 138 63.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-36 155.2 148 52.7
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 2.2e-31 140.2 107 66.4
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 5.0e-28 129.0 145 49.7
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.7e-23 114.0 78 70.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 3.1e-22 109.8 73 74.0
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.0e-17 94.7 61 75.4
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.4e-14 84.3 205 30.7
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-11 74.7 48 77.1
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 3.2e-11 73.2 48 75.0
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 3.2e-11 73.2 48 75.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.2e-11 73.2 109 45.9
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.3e-09 67.0 41 78.0
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.3e-09 67.0 41 78.0
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 8.8e-09 65.1 41 75.6
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 4.4e-08 62.8 51 58.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.4e-08 62.8 48 68.8
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.3e-07 61.2 98 42.9
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.2e-07 60.5 50 60.0
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 2.2e-07 60.5 167 27.5
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 2.8e-07 60.1 163 30.7
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 8.3e-07 58.5 163 30.7


User provided reference genes

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