Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01712 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 0.0e+00 1930.2 995 100.0
Rhsim11G0122700 Rhododendron simsii HOM05D005763 ORTHO05D005970 3.5e-189 666.4 996 46.0
CSS0027988 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 1.5e-139 501.5 1002 39.2
Dinv19414 Davidia involucrata HOM05D005763 ORTHO05D005970 1.7e-95 355.1 1000 32.0
Actinidia39001 Actinidia chinensis HOM05D005763 ORTHO05D005970 1.3e-74 285.8 257 63.0
GSVIVG01023250001 Vitis vinifera HOM05D005763 ORTHO05D005970 2.5e-70 271.6 1008 30.6
Cc02_g23160 Coffea canephora HOM05D005763 ORTHO05D005970 5.2e-68 263.8 1007 27.6
TAR628G0443 Trochodendron aralioides HOM05D005763 ORTHO05D005970 1.8e-65 255.4 1023 29.4
Lj9A299T32 Lonicera japonica HOM05D005763 ORTHO05D005970 4.1e-65 254.2 276 56.9
Nn7g37262 Nelumbo nucifera HOM05D005763 ORTHO05D005970 9.1e-65 253.1 1026 28.9
Nitab4.5_0004106g0020 Nicotiana tabacum HOM05D005763 ORTHO05D005970 7.7e-64 250.0 993 28.6
Hma1.2p1_0633F.1_g192600 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 1.0e-63 249.6 234 63.2
Oeu000133.1 Olea europaea HOM05D005763 ORTHO05D005970 7.2e-62 243.4 1004 29.1
Nitab4.5_0000787g0220 Nicotiana tabacum HOM05D005763 ORTHO05D005970 9.4e-62 243.0 1010 28.5
QL02p100429 Quercus lobata HOM05D005763 ORTHO05D005970 1.3e-58 232.6 1018 29.1
MSTRG.16490 Avicennia marina HOM05D005763 ORTHO05D005970 2.9e-55 221.5 1002 27.3
CiPaw.05G004900 Carya illinoinensis HOM05D005763 ORTHO05D005970 5.0e-55 220.7 1020 28.4
Cfa004488 Carpinus fangiana HOM05D005763 ORTHO05D005970 4.9e-50 204.1 1019 26.9
ECA236G4930 Erigeron canadensis HOM05D005763 ORTHO05D005970 1.1e-49 203.0 998 26.7
Lsat_1_v5_gn_7_76141 Lactuca sativa HOM05D005763 ORTHO05D005970 2.0e-48 198.7 1006 27.4
Migut.B00776 Erythranthe guttata HOM05D005763 ORTHO05D005970 5.9e-48 197.2 1006 26.1
Haze_10045 Corylus avellana HOM05D005763 ORTHO05D005970 1.3e-47 196.1 237 55.7
CAN.G855.2 Capsicum annuum HOM05D005763 ORTHO05D005970 6.1e-45 187.2 1004 26.3
SGA_v2.0_scaffold304G47918 Striga asiatica HOM05D005763 ORTHO05D005970 1.4e-44 186.0 250 52.8
DCAR_001755 Daucus carota HOM05D005763 ORTHO05D005970 5.2e-44 184.1 281 43.1
Prupe.1G578900 Prunus persica HOM05D005763 ORTHO05D005970 8.9e-44 183.3 1014 26.5
Ciclev10000672m.g Citrus clementina HOM05D005763 ORTHO05D005970 6.4e-42 177.2 234 50.4
Duzib132G0801 Durio zibethinus HOM05D005763 ORTHO05D005970 6.4e-42 177.2 236 50.4
PGSC0003DMG400024917 Solanum tuberosum HOM05D005763 ORTHO05D005970 1.1e-41 176.4 1004 26.0
TWI14G0927 Tripterygium wilfordii HOM05D005763 ORTHO05D005970 1.9e-41 175.6 1014 26.5
MD15G1435300 Malus domestica HOM05D005763 ORTHO05D005970 3.2e-41 174.9 1008 25.9
Manes.10G118700 Manihot esculenta HOM05D005763 ORTHO05D005970 4.1e-41 174.5 244 50.4
COL.COLO4_17725 Corchorus olitorius HOM05D005763 ORTHO05D005970 9.2e-41 173.3 236 50.8
Aqoxy5G02633 Aquilegia oxysepala HOM05D005763 ORTHO05D005970 4.6e-40 171.0 1031 26.6
Gohir.D01G174700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 1.7e-39 169.1 237 48.5
Sed0010757 Sechium edule HOM05D005763 ORTHO05D005970 3.9e-39 167.9 235 50.6
ClCG11G013280 Citrullus lanatus HOM05D005763 ORTHO05D005970 5.0e-39 167.5 237 51.1
Gohir.A01G183700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 5.0e-39 167.5 237 48.1
Gorai.002G216800 Gossypium raimondii HOM05D005763 ORTHO05D005970 5.0e-39 167.5 237 48.1
VMungo0540G0189 Vigna mungo HOM05D005763 ORTHO05D005970 5.0e-39 167.5 238 51.3
Peaxi162Scf00011g00123 Petunia axillaris HOM05D005763 ORTHO05D005970 1.1e-38 166.4 1015 24.6
Solyc01g103570.3 Solanum lycopersicum HOM05D005763 ORTHO05D005970 2.5e-38 165.2 1001 25.5
Eucgr.I02762 Eucalyptus grandis HOM05D005763 ORTHO05D005970 5.6e-38 164.1 238 50.4
Thecc.02G018700 Theobroma cacao HOM05D005763 ORTHO05D005970 7.3e-38 163.7 236 49.6
Sc07g0005120 Simmondsia chinensis HOM05D005763 ORTHO05D005970 1.6e-37 162.5 237 45.1
Phvul.006G219000 Phaseolus vulgaris HOM05D005763 ORTHO05D005970 2.1e-37 162.2 236 48.3
PGR142G3615 Punica granatum HOM05D005763 ORTHO05D005970 8.0e-37 160.2 247 47.0
Sopen01g045920 Solanum pennellii HOM05D005763 ORTHO05D005970 1.1e-36 159.8 1003 25.1
Atru.chr6.496 Acer truncatum HOM05D005763 ORTHO05D005970 1.8e-36 159.1 281 42.7
Cpa.g.sc113.46 Carica papaya HOM05D005763 ORTHO05D005970 2.3e-36 158.7 1006 24.6
Psat1g222400 Pisum sativum HOM05D005763 ORTHO05D005970 1.5e-35 156.0 238 47.9
arahy.Tifrunner.gnm1.ann1.67VJX2 Arachis hypogaea HOM05D005763 ORTHO05D005970 2.0e-35 155.6 241 49.4
Potri.004G223700 Populus trichocarpa HOM05D005763 ORTHO05D005970 2.0e-35 155.6 290 40.0
CsaV3_5G029800 Cucumis sativus L. HOM05D005763 ORTHO05D005970 2.6e-35 155.2 243 49.4
arahy.Tifrunner.gnm1.ann1.JZ48ZW Arachis hypogaea HOM05D005763 ORTHO05D005970 5.8e-35 154.1 241 49.0
FAN04G2209 Fragaria x ananassa HOM05D005763 ORTHO05D005970 2.2e-34 152.1 283 40.6
unitig_26.g9070 Utricularia gibba HOM05D005763 ORTHO05D005970 2.2e-34 152.1 242 46.7
MELO3C011821.2 Cucumis melo HOM05D005763 ORTHO05D005970 1.1e-33 149.8 1003 25.4
Medtr2g005820 Medicago truncatula HOM05D005763 ORTHO05D005970 7.0e-33 147.1 241 48.1
TPR.G2121 Trifolium pratense HOM05D005763 ORTHO05D005970 1.2e-32 146.4 243 47.7
FvH4_5g28621 Fragaria vesca HOM05D005763 ORTHO05D005970 2.1e-32 145.6 283 40.6
FAN18G2102 Fragaria x ananassa HOM05D005763 ORTHO05D005970 2.1e-32 145.6 283 40.6
FAN08G3368 Fragaria x ananassa HOM05D005763 ORTHO05D005970 2.7e-32 145.2 282 40.4
RcHm_v2.0_Chr7g0220691 Rosa chinensis HOM05D005763 ORTHO05D005970 3.5e-32 144.8 168 56.0
MBI06_g44454_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 7.8e-32 143.7 263 43.3
PSO017G0231 Papaver somniferum HOM05D005763 ORTHO05D005970 2.1e-29 135.6 262 39.3
PSO170G4663 Papaver somniferum HOM05D005763 ORTHO05D005970 2.3e-28 132.1 262 38.9
CANSAT54G0901 Cannabis sativa HOM05D005763 ORTHO05D005970 3.1e-28 131.7 289 38.1
CDE08G1622 Ceratophyllum demersum HOM05D005763 ORTHO05D005970 4.0e-28 131.3 239 42.7
SalBow7G1738 Salvia bowleyana HOM05D005763 ORTHO05D005970 3.4e-27 128.3 215 45.1
Hund15460 Selenicereus undatus HOM05D005763 ORTHO05D005970 5.8e-27 127.5 257 39.7
HanXRQChr11g0338791 Helianthus annuus HOM05D005763 ORTHO05D005970 1.7e-26 125.9 273 36.3
Lalb_Chr15g0090741 Lupinus albus HOM05D005763 ORTHO05D005970 1.3e-23 116.3 240 45.0
Sabra01G0155000 Salix brachista HOM05D005763 ORTHO05D005970 2.3e-23 115.5 257 40.9
AL2G18660 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 3.0e-23 115.2 270 41.1
EL10Ac6g14141 Beta vulgaris HOM05D005763 ORTHO05D005970 6.6e-23 114.0 256 35.5
THA.LOC104820230 Tarenaya hassleriana HOM05D005763 ORTHO05D005970 2.5e-22 112.1 295 33.6
Glyma.12G166900 Glycine max HOM05D005763 ORTHO05D005970 2.1e-21 109.0 238 42.0
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 1.8e-20 105.9 232 35.3
Actinidia39003 Actinidia chinensis HOM05D005763 ORTHO05D005970 5.2e-20 104.4 238 34.9
Glyma.16G003000 Glycine max HOM05D005763 ORTHO05D005970 5.2e-20 104.4 238 42.0
AUR62028255 Chenopodium quinoa HOM05D005763 ORTHO05D005970 1.2e-19 103.2 257 35.0
Sp2g05580 Schrenkiella parvula HOM05D005763 ORTHO05D005970 2.0e-19 102.4 267 36.3
Hma1.2p1_0633F.1_g192590 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 2.6e-19 102.1 142 43.7
ATR1136G018 Amborella trichopoda HOM05D005763 ORTHO05D005970 5.8e-19 100.9 270 30.7
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.3e-18 99.8 89 58.4
Ca_00042_v3 Cicer arietinum L. HOM05D005763 ORTHO05D005970 1.7e-18 99.4 209 44.0
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 2.2e-18 99.0 232 34.5
AUR62040622 Chenopodium quinoa HOM05D005763 ORTHO05D005970 3.8e-18 98.2 264 33.7
Thhalv10023369m.g Eutrema salsugineum HOM05D005763 ORTHO05D005970 3.8e-18 98.2 267 38.2
Lj6g0006999 Lotus japonicus HOM05D005763 ORTHO05D005970 6.4e-18 97.4 246 36.6
Sabra01G0169400 Salix brachista HOM05D005763 ORTHO05D005970 1.9e-17 95.9 188 35.1
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 3.2e-17 95.1 264 34.5
AT1G58025 Arabidopsis thaliana HOM05D005763 ORTHO05D005970 7.1e-17 94.0 263 37.3
BcaB04g20185 Brassica carinata HOM05D005763 ORTHO05D005970 9.2e-17 93.6 294 31.6
Carub.0002s0660 Capsella rubella HOM05D005763 ORTHO05D005970 2.3e-15 89.0 265 35.8
A01p28160 Brassica napus HOM05D005763 ORTHO05D005970 8.7e-15 87.0 247 32.0
BraA01t02945Z Brassica rapa HOM05D005763 ORTHO05D005970 8.7e-15 87.0 247 32.0
AL2G18480 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 1.5e-14 86.3 264 35.2
Lj9A299T33 Lonicera japonica HOM05D005763 ORTHO05D005970 1.5e-14 86.3 89 56.2
MD08G1241300 Malus domestica HOM05D005763 ORTHO05D005970 4.3e-14 84.7 110 50.9
MBI06_g48164_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 5.6e-14 84.3 165 39.4
C01p35700 Brassica napus HOM05D005763 ORTHO05D005970 7.3e-14 84.0 247 30.8
BolC1t03529H Brassica oleracea HOM05D005763 ORTHO05D005970 7.3e-14 84.0 247 30.8
BcaC09g49515 Brassica carinata HOM05D005763 ORTHO05D005970 4.7e-13 81.3 247 30.4
CARHR054180 Cardamine hirsuta HOM05D005763 ORTHO05D005970 2.4e-12 79.0 263 32.7
arahy.Tifrunner.gnm1.ann1.BFGT2Z Arachis hypogaea HOM05D005763 ORTHO05D005970 4.0e-12 78.2 130 45.4
HPP92_011333 Vanilla planifolia HOM05D005763 ORTHO05D005970 4.4e-11 74.7 265 32.8
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 5.8e-11 74.3 48 70.8
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 7.6e-11 73.9 124 40.3
arahy.Tifrunner.gnm1.ann1.V25XF9 Arachis hypogaea HOM05D005763 ORTHO05D005970 8.4e-10 70.5 70 51.4
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 1.4e-09 69.7 60 56.7
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 5.4e-09 67.8 234 29.9
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 5.4e-09 67.8 103 41.7
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.2e-08 66.6 88 44.3
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.2e-08 66.6 88 44.3
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 7.8e-08 63.9 70 50.0
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.3e-07 63.2 86 41.9
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.3e-07 63.2 86 41.9
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 1.3e-07 63.2 91 42.9
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 1.7e-07 62.8 53 56.6
Lsat_1_v5_gn_9_120281 Lactuca sativa HOM05D005763 ORTHO05D005970 1.7e-07 62.8 89 42.7
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 1.7e-07 62.8 145 34.5
Os08g0109500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 2.3e-07 62.4 281 25.6
Zm00001eb174170 Zea mays HOM05D005763 ORTHO05D005970 2.3e-07 62.4 260 28.5
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 5.1e-07 61.2 35 85.7
Os06g0355500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 8.7e-07 60.5 283 27.9
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 1.1e-06 60.1 87 42.5
COL.COLO4_29043 Corchorus olitorius HOM05D005763 ORTHO05D005970 1.5e-06 59.7 50 52.0
SEGI_38432 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 1.5e-06 59.7 266 30.5
CSS0017831 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 3.3e-06 58.5 229 28.8
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 3.3e-06 58.5 55 56.4
SEGI_32531 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 7.3e-06 57.4 37 70.3


User provided reference genes

Program Settings