Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.2e-115 419.9 211 100.0
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.8e-39 166.8 86 96.5
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.8e-31 140.2 105 73.3
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 5.3e-31 138.7 86 81.4
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 9.1e-31 137.9 105 71.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.5e-28 129.8 90 73.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.2e-28 129.4 106 68.9
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.2e-28 129.0 106 67.9
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.5e-28 128.6 105 69.5
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 9.4e-28 127.9 105 67.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.1e-27 126.7 105 66.7
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.1e-27 126.7 106 67.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.1e-27 126.7 105 66.7
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 7.9e-27 124.8 106 66.0
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.0e-26 122.9 105 66.7
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 6.7e-26 121.7 87 69.0
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 8.8e-26 121.3 108 63.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.1e-25 120.9 106 61.3
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.5e-25 120.6 84 75.0
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.7e-25 117.9 108 65.7
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.7e-24 117.1 108 62.0
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.2e-24 116.7 105 63.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.8e-24 116.3 106 60.4
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.7e-24 115.9 86 70.9
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.7e-24 115.9 106 60.4
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 4.8e-24 115.5 106 63.2
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.8e-24 115.5 108 64.8
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 4.8e-24 115.5 71 83.1
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 6.3e-24 115.2 87 65.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.2e-24 114.8 106 63.2
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.2e-24 114.8 106 63.2
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 8.2e-24 114.8 106 63.2
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 8.2e-24 114.8 105 62.9
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 8.2e-24 114.8 82 73.2
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.1e-23 114.4 90 70.0
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.1e-23 114.4 108 63.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.8e-23 113.6 105 61.0
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.8e-23 113.6 105 60.0
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.4e-23 113.2 107 66.4
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.1e-23 112.8 111 63.1
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.1e-23 112.8 105 62.9
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 4.1e-23 112.5 105 61.9
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 4.1e-23 112.5 105 62.9
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 4.1e-23 112.5 105 63.8
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 5.3e-23 112.1 105 60.0
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.3e-23 112.1 105 61.9
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 7.0e-23 111.7 105 61.9
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.0e-23 111.7 105 62.9
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 7.0e-23 111.7 94 62.8
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 7.0e-23 111.7 108 60.2
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 9.1e-23 111.3 88 67.0
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 9.1e-23 111.3 78 70.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.2e-22 110.9 105 60.0
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.2e-22 110.9 85 70.6
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.2e-22 110.9 94 67.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.5e-22 110.5 106 62.3
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 1.5e-22 110.5 105 61.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.5e-22 110.5 72 76.4
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-22 110.2 105 60.0
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.0e-22 110.2 106 59.4
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.6e-22 109.8 105 58.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.6e-22 109.8 65 84.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.6e-22 109.8 105 58.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 2.6e-22 109.8 105 61.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.6e-22 109.8 95 64.2
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.5e-22 109.4 84 69.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 3.5e-22 109.4 105 60.0
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 3.5e-22 109.4 94 64.9
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 4.5e-22 109.0 87 65.5
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 5.9e-22 108.6 89 68.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 5.9e-22 108.6 87 69.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 5.9e-22 108.6 106 60.4
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 5.9e-22 108.6 100 59.0
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 7.7e-22 108.2 108 59.3
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.0e-21 107.8 88 65.9
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-21 107.5 105 58.1
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.3e-21 107.5 91 63.7
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-21 107.5 186 39.2
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.3e-21 107.5 89 70.8
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.2e-21 106.7 91 67.0
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 2.2e-21 106.7 108 58.3
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.9e-21 106.3 91 67.0
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.9e-21 106.3 105 55.2
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 2.9e-21 106.3 100 58.0
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.9e-21 106.3 106 59.4
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.8e-21 105.9 105 55.2
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.8e-21 105.9 105 55.2
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.8e-21 105.9 91 62.6
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 3.8e-21 105.9 95 62.1
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 5.0e-21 105.5 105 57.1
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.5e-21 105.1 105 55.2
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 6.5e-21 105.1 78 71.8
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 6.5e-21 105.1 78 71.8
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 6.5e-21 105.1 105 55.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 6.5e-21 105.1 105 56.2
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.5e-21 105.1 91 64.8
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 8.5e-21 104.8 76 72.4
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.1e-20 104.4 108 58.3
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-20 104.0 105 54.3
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.5e-20 104.0 81 64.2
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.5e-20 104.0 176 40.3
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.9e-20 103.6 99 58.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.2e-20 102.8 105 54.3
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.2e-20 102.8 83 62.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.2e-20 102.8 96 64.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.5e-20 102.1 102 55.9
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.5e-20 102.1 82 65.9
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 7.2e-20 101.7 105 54.3
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 7.2e-20 101.7 105 55.2
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 9.4e-20 101.3 107 58.9
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.2e-19 100.9 106 56.6
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.2e-19 100.9 105 55.2
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.6e-19 100.5 106 54.7
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-19 100.5 105 53.3
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.6e-19 100.5 105 53.3
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 2.1e-19 100.1 139 48.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.7e-19 99.8 105 53.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.8e-18 97.1 106 53.8
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.8e-18 97.1 105 53.3
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.8e-18 97.1 105 53.3
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 4.0e-18 95.9 101 53.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 4.0e-18 95.9 110 53.6
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 6.7e-18 95.1 78 66.7
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.7e-18 95.1 75 62.7
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.7e-18 95.1 75 62.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 8.8e-18 94.7 94 59.6
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.1e-17 94.4 94 56.4
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.1e-17 94.4 58 77.6
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.0e-17 93.6 61 72.1
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-17 93.6 106 56.6
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.3e-17 92.8 78 64.1
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 4.4e-17 92.4 85 60.0
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 7.5e-17 91.7 63 74.6
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 9.7e-17 91.3 110 50.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 9.7e-17 91.3 106 55.7
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.3e-16 90.9 71 66.2
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-16 90.9 75 61.3
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.7e-16 90.5 50 88.0
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.8e-16 89.7 71 66.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.1e-15 85.9 78 61.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.6e-14 83.2 86 58.1
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.5e-14 82.8 56 69.6
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.5e-14 82.4 86 58.1
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.7e-13 80.5 68 58.8
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.5e-13 78.2 53 75.5
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.5e-13 78.2 53 75.5
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 8.5e-13 78.2 73 60.3
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 9.4e-12 74.7 51 64.7
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-11 73.9 46 78.3
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.7e-11 73.2 65 60.0
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.0e-10 69.7 50 74.0
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.3e-08 64.3 44 72.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 4.1e-07 59.3 40 65.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.4e-07 58.9 43 58.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.4e-07 58.9 43 58.1
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.2e-06 57.8 62 45.2
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 3.5e-06 56.2 71 43.7


User provided reference genes

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