Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 7.8e-81 303.9 173 100.0
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 3.8e-51 205.3 184 69.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 9.7e-47 190.7 187 67.9
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 9.7e-47 190.7 190 68.9
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.3e-46 190.3 184 62.0
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.2e-46 189.5 182 69.8
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 6.3e-46 188.0 179 69.3
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.4e-45 186.8 183 68.3
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.8e-45 186.4 182 61.5
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.8e-45 186.4 176 65.9
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.4e-45 186.0 186 64.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 2.4e-45 186.0 164 68.9
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.4e-45 186.0 176 71.0
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 9.0e-45 184.1 183 69.9
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 9.0e-45 184.1 182 67.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 9.0e-45 184.1 185 61.6
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.2e-44 183.7 182 61.0
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-44 183.3 182 66.5
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.6e-44 182.6 175 69.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.6e-44 182.6 179 69.8
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 3.4e-44 182.2 177 65.0
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.5e-44 181.8 176 69.3
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.5e-44 181.8 177 65.0
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 5.9e-44 181.4 184 62.0
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 7.7e-44 181.0 174 69.0
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.0e-43 180.6 184 62.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.7e-43 179.9 191 63.4
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.2e-43 179.5 188 60.6
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.9e-43 179.1 151 71.5
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 3.8e-43 178.7 169 67.5
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 3.8e-43 178.7 192 64.6
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 5.0e-43 178.3 180 66.1
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 5.0e-43 178.3 180 66.1
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 6.5e-43 177.9 175 68.6
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 6.5e-43 177.9 175 66.9
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 6.5e-43 177.9 200 55.0
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.4e-42 176.8 178 66.3
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.9e-42 176.4 178 68.0
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.9e-42 176.4 182 64.3
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.5e-42 176.0 158 70.3
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 3.2e-42 175.6 185 68.1
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 3.2e-42 175.6 193 57.5
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 4.2e-42 175.3 186 59.1
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 4.2e-42 175.3 195 63.1
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 5.5e-42 174.9 165 62.4
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 7.2e-42 174.5 202 58.9
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 7.2e-42 174.5 191 61.3
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 7.2e-42 174.5 174 66.7
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 9.4e-42 174.1 183 59.6
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 9.4e-42 174.1 186 58.6
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.2e-41 173.7 184 66.3
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-41 173.7 191 63.9
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 1.6e-41 173.3 193 63.7
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.1e-41 172.9 185 58.4
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 2.1e-41 172.9 180 63.9
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.1e-41 172.9 192 63.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.1e-41 172.9 184 60.3
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 4.6e-41 171.8 188 62.8
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 6.1e-41 171.4 191 56.5
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 1.0e-40 170.6 152 66.4
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.0e-40 170.6 184 59.8
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.0e-40 170.6 193 64.2
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.0e-40 170.6 176 60.8
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.4e-40 170.2 193 59.1
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.8e-40 169.9 160 70.0
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.8e-40 169.9 193 58.5
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.3e-40 169.5 184 60.3
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.0e-40 169.1 190 63.7
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 3.9e-40 168.7 190 63.2
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 5.1e-40 168.3 142 65.5
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 5.1e-40 168.3 186 61.3
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 5.1e-40 168.3 191 62.3
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 5.1e-40 168.3 186 61.3
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.1e-40 168.3 185 58.4
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 6.7e-40 167.9 194 58.8
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 6.7e-40 167.9 144 66.0
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 8.8e-40 167.5 184 65.2
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 8.8e-40 167.5 150 72.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.1e-39 167.2 172 59.9
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.5e-39 166.8 166 65.7
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.5e-39 166.8 189 60.3
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.0e-39 166.4 160 68.1
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.0e-39 166.4 203 56.2
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.5e-39 166.0 183 65.0
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 2.5e-39 166.0 190 58.9
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.5e-39 166.0 193 62.2
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.3e-39 165.6 184 64.1
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 3.3e-39 165.6 178 59.0
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 3.3e-39 165.6 176 64.2
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 9.7e-39 164.1 184 64.7
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.7e-39 164.1 181 64.1
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.3e-38 163.7 187 56.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.3e-38 163.7 187 56.7
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.3e-38 163.7 176 60.8
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.3e-38 163.7 184 61.4
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.2e-38 162.9 132 66.7
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 2.8e-38 162.5 178 64.0
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.8e-38 162.5 183 59.0
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.7e-38 162.2 164 66.5
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 3.7e-38 162.2 194 59.8
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.8e-38 161.8 138 73.2
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.3e-38 161.4 192 60.9
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 8.2e-38 161.0 188 61.7
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.1e-37 160.6 192 54.2
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.1e-37 160.6 163 64.4
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.1e-37 160.6 189 56.1
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.1e-37 160.6 190 58.9
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.4e-37 159.5 185 62.7
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.1e-37 158.7 183 60.1
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 5.3e-37 158.3 193 59.1
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 6.9e-37 157.9 182 61.5
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.6e-36 156.0 193 57.5
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.6e-36 156.0 138 71.0
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 3.4e-36 155.6 176 63.1
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 4.5e-36 155.2 181 58.0
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.7e-35 153.3 180 57.2
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.7e-35 153.3 220 51.4
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 2.2e-35 152.9 84 88.1
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 4.2e-34 148.7 192 55.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 5.5e-34 148.3 143 62.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.6e-33 145.6 94 76.6
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.4e-32 143.7 167 51.5
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.0e-31 139.8 165 58.2
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.4e-29 132.9 174 58.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 2.6e-28 129.4 75 81.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 4.5e-28 128.6 70 85.7
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 5.9e-28 128.3 69 85.5
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 5.2e-24 115.2 82 67.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 2.0e-23 113.2 114 62.3
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.6e-23 112.8 150 56.0
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 9.7e-23 110.9 149 59.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 6.3e-22 108.2 180 49.4
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.4e-21 107.1 62 82.3
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 4.1e-21 105.5 67 79.1
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 9.1e-21 104.4 149 59.7
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.2e-20 104.0 80 62.5
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 8.5e-19 97.8 92 52.2
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.5e-18 97.1 83 53.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.2e-15 87.4 169 45.0
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 7.5e-15 84.7 81 60.5
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 6.3e-14 81.6 138 54.3
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 2.4e-13 79.7 171 46.2
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.6e-09 67.0 67 49.3
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.8e-08 63.5 39 69.2
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 5.7e-07 58.5 142 43.0


User provided reference genes

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