Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 8.7e-125 450.3 223 100.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 3.9e-56 222.2 127 89.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 8.6e-56 221.1 125 88.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 4.7e-54 215.3 127 85.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-53 213.8 127 83.5
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-53 211.5 127 82.7
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 8.9e-53 211.1 127 82.7
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.9e-51 206.1 122 82.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 8.3e-51 204.5 127 80.3
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.4e-50 203.8 114 86.0
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.4e-50 203.8 114 85.1
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.2e-50 202.6 127 78.0
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.1e-50 202.2 127 78.7
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 4.1e-50 202.2 127 78.7
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.1e-50 202.2 127 80.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.4e-50 201.8 127 78.7
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.2e-50 201.1 127 79.5
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 9.2e-50 201.1 127 78.0
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.2e-49 200.7 127 78.0
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.2e-49 200.7 127 78.7
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.6e-49 200.3 127 77.2
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.6e-49 200.3 114 86.0
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 2.7e-49 199.5 127 79.5
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.5e-49 199.1 127 76.4
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 4.6e-49 198.7 114 84.2
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 6.0e-49 198.4 125 79.2
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 6.0e-49 198.4 127 78.0
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 7.8e-49 198.0 114 83.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 7.8e-49 198.0 113 85.0
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.0e-48 197.6 114 84.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.0e-48 197.6 127 76.4
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.0e-48 197.6 127 74.8
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.7e-48 196.8 127 75.6
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.7e-48 196.8 127 74.8
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.7e-48 196.8 114 83.3
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 2.3e-48 196.4 114 82.5
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 2.3e-48 196.4 127 78.7
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.0e-48 196.1 127 76.4
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 5.1e-48 195.3 127 74.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 5.1e-48 195.3 114 82.5
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 5.1e-48 195.3 114 82.5
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 6.6e-48 194.9 114 82.5
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 8.6e-48 194.5 114 81.6
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 8.6e-48 194.5 128 75.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 8.6e-48 194.5 114 83.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.1e-47 194.1 114 81.6
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.1e-47 194.1 114 81.6
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.5e-47 193.7 127 74.8
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.9e-47 193.4 125 74.4
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.9e-47 193.4 114 81.6
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.5e-47 193.0 114 80.7
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 2.5e-47 193.0 127 74.8
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.3e-47 192.6 114 80.7
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 3.3e-47 192.6 114 80.7
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 3.3e-47 192.6 125 76.0
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.3e-47 192.6 127 71.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 3.3e-47 192.6 127 73.2
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 4.3e-47 192.2 127 72.4
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 4.3e-47 192.2 114 80.7
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 4.3e-47 192.2 114 80.7
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 4.3e-47 192.2 127 74.0
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 5.6e-47 191.8 125 72.8
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 5.6e-47 191.8 114 79.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 7.3e-47 191.4 114 82.5
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 9.5e-47 191.0 114 79.8
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 9.5e-47 191.0 117 79.5
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.2e-46 190.7 114 78.9
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.6e-46 190.3 127 73.2
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.6e-46 190.3 127 70.9
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.6e-46 190.3 125 74.4
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.1e-46 189.9 127 70.9
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.1e-46 189.9 127 70.9
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.1e-46 189.9 127 70.9
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.1e-46 189.9 127 70.9
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.8e-46 189.5 128 71.9
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.8e-46 189.5 118 78.8
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 4.7e-46 188.7 127 70.1
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.7e-46 188.7 127 73.2
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 4.7e-46 188.7 127 71.7
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 8.1e-46 188.0 114 77.2
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 8.1e-46 188.0 116 81.0
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.1e-45 187.6 125 75.2
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.1e-45 187.6 114 78.1
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.1e-45 187.6 114 78.9
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.4e-45 187.2 127 70.1
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.4e-45 187.2 125 74.4
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.8e-45 186.8 127 70.1
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 2.3e-45 186.4 127 69.3
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 2.3e-45 186.4 127 69.3
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 2.3e-45 186.4 127 69.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 2.3e-45 186.4 127 69.3
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 3.1e-45 186.0 127 70.9
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-45 186.0 127 70.9
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-45 186.0 127 70.9
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-45 186.0 127 70.9
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.2e-45 185.3 127 70.1
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 8.9e-45 184.5 157 63.7
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.2e-44 184.1 127 72.4
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-44 183.7 128 69.5
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.5e-44 183.7 128 69.5
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.5e-44 183.7 129 71.3
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 2.0e-44 183.3 127 70.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.8e-44 181.8 127 71.7
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.3e-43 180.6 123 72.4
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.1e-42 177.6 121 69.4
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 2.4e-42 176.4 127 66.1
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.1e-41 173.3 149 60.4
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 2.1e-41 173.3 106 79.2
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.1e-41 173.3 95 86.3
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 4.6e-41 172.2 127 70.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 7.8e-41 171.4 114 68.4
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.0e-40 171.0 125 68.0
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 5.1e-40 168.7 114 66.7
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 6.6e-40 168.3 114 71.1
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 6.6e-40 168.3 114 70.2
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 8.6e-40 167.9 98 81.6
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 8.6e-40 167.9 106 76.4
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.9e-39 166.8 96 83.3
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.9e-39 166.8 96 83.3
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.5e-39 166.4 107 76.6
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.3e-39 166.0 104 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.2e-38 164.1 115 68.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.2e-38 164.1 112 67.0
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.6e-38 163.7 139 63.3
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.1e-38 163.3 83 92.8
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 4.0e-37 159.1 127 61.4
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 3.4e-36 156.0 93 77.4
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 8.4e-35 151.4 114 64.9
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.2e-34 149.4 99 75.8
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 4.2e-34 149.1 138 61.6
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 7.8e-33 144.8 114 67.5
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-31 140.6 109 59.6
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.1e-30 136.7 119 59.7
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.8e-30 135.6 109 58.7
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.8e-29 133.7 84 75.0
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.7e-24 114.8 90 64.4
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 1.5e-20 104.0 117 47.9
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 4.5e-20 102.4 87 58.6
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.9e-15 87.0 118 43.2
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 4.3e-15 85.9 67 62.7
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 3.2e-10 69.7 113 32.7
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 4.2e-10 69.3 114 37.7
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-09 67.8 47 72.3
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 6.0e-09 65.5 34 91.2
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 6.0e-09 65.5 34 91.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.8e-08 63.9 47 70.2
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 3.3e-07 59.7 100 30.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 4.3e-07 59.3 146 26.7
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-06 57.8 40 67.5
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 1.3e-06 57.8 40 67.5
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 4.8e-06 55.8 48 62.5


User provided reference genes

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