Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 1.2e-175 619.8 310 100.0
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 3.9e-99 365.5 310 66.1
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.1e-90 337.4 309 59.9
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 9.7e-90 334.3 309 59.5
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.0e-86 324.3 307 59.0
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.0e-83 314.3 310 57.1
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.2e-79 300.8 309 56.0
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.0e-79 300.1 310 53.9
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 3.5e-79 299.3 309 55.0
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 3.5e-79 299.3 309 55.3
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 7.7e-79 298.1 198 76.8
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.0e-78 297.7 203 73.4
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 6.5e-78 295.0 310 52.9
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.5e-77 293.1 308 52.9
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 3.2e-77 292.7 197 73.1
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 4.2e-77 292.4 196 73.5
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.1e-76 290.0 200 74.0
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 2.1e-76 290.0 200 70.5
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.0e-76 288.1 310 51.9
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.0e-75 286.2 200 70.5
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.0e-75 286.2 200 70.5
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 4.0e-75 285.8 196 71.9
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.0e-74 283.5 310 51.6
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 2.0e-74 283.5 197 71.1
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.0e-74 283.5 309 50.8
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.6e-74 283.1 200 70.0
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 2.6e-74 283.1 309 51.1
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 7.5e-74 281.6 309 50.5
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 7.5e-74 281.6 197 70.6
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 7.5e-74 281.6 309 50.8
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 9.7e-74 281.2 201 69.7
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.7e-73 280.4 201 71.1
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 2.8e-73 279.6 197 69.0
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 2.8e-73 279.6 200 69.0
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.1e-72 277.7 182 75.8
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.1e-72 277.7 310 51.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.8e-72 276.9 200 68.5
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.8e-72 276.9 197 69.0
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 2.4e-72 276.6 197 69.5
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 3.1e-72 276.2 310 51.6
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 9.1e-72 274.6 309 50.8
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.2e-71 274.2 200 68.0
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.6e-71 273.9 340 48.2
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 2.0e-71 273.5 309 52.4
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 2.0e-71 273.5 178 75.8
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 3.5e-71 272.7 197 69.0
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.5e-71 272.7 200 68.0
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.0e-70 271.2 199 66.8
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.9e-70 269.6 201 68.2
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.9e-70 269.6 169 76.9
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.0e-70 268.9 309 49.8
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 6.5e-70 268.5 309 51.1
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.1e-69 267.7 201 68.7
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.5e-69 267.3 180 74.4
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.9e-69 266.9 309 48.9
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.9e-69 266.9 166 80.1
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.2e-69 266.2 330 49.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.2e-68 264.2 313 50.2
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.6e-68 263.8 197 68.0
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.1e-68 263.5 200 67.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.1e-68 263.5 197 67.0
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 4.7e-68 262.3 197 66.5
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 6.1e-68 261.9 202 65.8
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 8.0e-68 261.5 228 60.5
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.8e-67 260.4 201 65.2
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.8e-67 260.4 203 62.6
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.8e-67 260.4 309 49.8
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.0e-67 259.6 199 64.8
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 4.0e-67 259.2 205 64.4
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 4.0e-67 259.2 203 62.6
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.2e-67 258.8 201 64.7
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 5.2e-67 258.8 204 64.7
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-66 257.7 192 67.2
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.2e-66 257.7 212 62.3
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.0e-66 256.9 197 65.5
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 3.4e-66 256.1 227 60.4
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.4e-66 256.1 198 66.2
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.2e-65 253.4 199 65.8
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 2.2e-65 253.4 229 59.4
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 2.2e-65 253.4 197 66.0
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.8e-65 253.1 177 69.5
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 4.8e-65 252.3 219 61.6
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 4.8e-65 252.3 219 61.6
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 6.3e-65 251.9 174 72.4
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 8.3e-65 251.5 311 48.6
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 1.1e-64 251.1 197 66.0
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.8e-64 250.4 197 66.0
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 9.1e-64 248.1 200 62.0
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.6e-63 247.3 199 61.3
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 7.7e-63 245.0 197 61.9
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.0e-62 244.6 195 63.1
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.7e-62 243.8 197 60.9
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 8.6e-62 241.5 197 64.0
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.5e-61 240.7 199 60.3
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 1.2e-60 237.7 202 62.9
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.6e-60 237.3 226 57.5
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 4.7e-60 235.7 202 62.9
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 6.1e-60 235.3 201 61.2
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.8e-59 233.8 202 61.4
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.3e-59 233.4 174 67.8
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 3.0e-59 233.0 197 60.4
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 5.2e-59 232.3 209 61.2
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 2.0e-58 230.3 157 73.2
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 3.4e-58 229.6 157 73.2
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 3.4e-58 229.6 202 59.9
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 7.5e-58 228.4 157 72.6
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 9.8e-58 228.0 203 62.1
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 9.8e-58 228.0 201 59.2
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-57 227.6 204 59.3
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.3e-57 227.6 171 68.4
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.7e-57 227.3 192 62.5
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.8e-57 226.5 201 60.2
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 2.8e-57 226.5 201 60.2
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.8e-57 226.5 201 60.2
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.8e-56 223.8 160 70.6
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 3.1e-56 223.0 158 71.5
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.0e-55 220.3 201 58.7
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.0e-55 220.3 201 58.7
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.7e-55 219.9 156 71.2
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 5.0e-54 215.7 196 58.2
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 8.6e-54 214.9 187 61.0
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.5e-53 214.2 181 63.5
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 2.5e-53 213.4 191 58.1
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.3e-53 213.0 153 70.6
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 7.3e-53 211.8 216 54.6
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.6e-52 210.7 241 50.6
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 5.2e-51 205.7 132 78.0
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 1.5e-50 204.1 149 67.8
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.4e-50 203.0 200 53.5
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.1e-48 198.0 200 53.0
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.1e-48 198.0 196 53.6
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.4e-48 195.7 151 64.9
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.0e-47 193.7 233 51.1
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.3e-46 191.0 196 52.6
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 8.6e-46 188.3 152 61.2
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 2.8e-44 183.3 198 51.5
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.2e-44 182.2 198 52.0
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 4.4e-42 176.0 109 79.8
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 7.5e-42 175.3 152 62.5
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 4.9e-41 172.6 126 67.5
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 6.6e-38 162.2 100 83.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.4e-32 144.4 141 56.0
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.6e-31 141.0 130 58.5
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 4.6e-31 139.4 101 70.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 7.8e-31 138.7 134 59.0
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 4.3e-29 132.9 131 57.3
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.6e-29 132.5 99 61.6
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.3e-29 132.1 132 53.0
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.1e-24 118.2 76 76.3
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.8e-20 103.6 68 76.5
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.4e-16 91.3 64 71.9
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.4e-16 89.4 64 65.6
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.2e-15 88.2 95 56.8
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.2e-15 88.2 95 56.8
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.3e-14 84.0 132 36.4
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.1e-13 81.6 104 44.2
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 2.8e-12 77.0 104 41.3
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 6.4e-09 65.9 66 48.5


User provided reference genes

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