Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.3e-125 453.8 357 100.0
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 3.4e-62 243.0 364 62.1
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 8.6e-58 228.4 357 65.8
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 2.5e-57 226.9 377 54.9
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 4.3e-57 226.1 349 65.6
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 9.5e-57 224.9 345 66.4
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 6.2e-56 222.2 355 65.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.4e-55 221.1 346 65.9
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 4.0e-55 219.5 355 55.2
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.2e-55 219.2 357 66.9
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 8.9e-55 218.4 351 68.1
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 3.4e-54 216.5 346 49.1
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 9.9e-54 214.9 352 63.1
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.3e-53 214.5 352 66.8
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.8e-53 213.0 278 58.3
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 3.8e-53 213.0 355 66.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.8e-53 213.0 350 66.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.8e-53 213.0 349 64.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 6.4e-53 212.2 352 65.9
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 8.4e-53 211.8 348 59.8
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.4e-53 211.8 345 67.0
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.1e-52 211.5 355 65.4
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.4e-52 211.1 350 68.0
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.4e-52 211.1 347 66.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.4e-52 210.3 348 67.5
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.2e-52 209.9 348 60.1
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 3.2e-52 209.9 338 67.8
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 7.1e-52 208.8 349 58.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 9.2e-52 208.4 352 65.9
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 9.2e-52 208.4 356 66.9
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.1e-51 207.2 350 66.3
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.7e-51 206.8 366 57.7
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.5e-51 206.5 350 65.4
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 3.5e-51 206.5 351 66.7
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.5e-51 206.5 345 65.5
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.6e-51 206.1 348 66.7
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 4.6e-51 206.1 347 64.8
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.0e-51 205.7 362 55.2
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 6.0e-51 205.7 348 66.4
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 6.0e-51 205.7 355 65.4
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 6.0e-51 205.7 348 64.7
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 7.8e-51 205.3 355 65.6
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.3e-50 204.5 346 65.3
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.3e-50 204.5 350 66.3
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.3e-50 204.5 348 64.9
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-50 204.5 349 66.8
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.3e-50 203.8 350 66.9
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.0e-50 203.4 346 65.0
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.0e-50 203.4 355 65.1
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 3.9e-50 203.0 353 66.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 5.1e-50 202.6 352 66.2
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 8.6e-50 201.8 361 65.4
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.1e-49 201.4 348 66.1
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-49 201.4 355 64.8
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.1e-49 201.4 347 65.1
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.5e-49 201.1 348 64.9
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.5e-49 201.1 347 65.7
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.5e-49 201.1 348 65.2
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.5e-49 201.1 354 65.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.9e-49 200.7 351 65.0
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.9e-49 200.7 356 65.2
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.5e-49 200.3 353 65.4
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.5e-49 200.3 346 65.6
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.5e-49 200.3 352 65.9
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.5e-49 200.3 352 65.9
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.5e-49 200.3 351 64.7
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 3.3e-49 199.9 354 64.1
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 3.3e-49 199.9 356 64.6
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 4.3e-49 199.5 336 66.7
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 4.3e-49 199.5 336 66.7
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 4.3e-49 199.5 346 65.3
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.3e-49 199.5 350 62.9
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.2e-48 198.0 346 65.3
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.6e-48 197.6 356 64.3
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.1e-48 197.2 347 65.4
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.8e-48 196.8 356 64.6
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 3.6e-48 196.4 358 64.2
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.7e-48 196.1 347 64.8
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.7e-48 196.1 347 64.8
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.1e-47 194.9 353 64.6
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.1e-47 194.9 346 64.7
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.1e-47 194.9 355 64.2
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.4e-47 194.5 336 65.8
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.4e-47 193.7 355 64.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.0e-47 193.0 349 63.6
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.0e-47 193.0 352 63.9
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 5.2e-47 192.6 324 65.7
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 5.2e-47 192.6 357 62.2
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.9e-47 192.2 535 42.2
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 9.0e-47 191.8 347 47.6
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 9.0e-47 191.8 346 65.6
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 9.0e-47 191.8 331 67.4
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 2.0e-46 190.7 370 60.5
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.0e-46 190.7 348 64.1
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.4e-46 189.5 353 64.0
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 5.8e-46 189.1 348 64.1
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.8e-46 189.1 348 64.1
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 5.8e-46 189.1 348 64.1
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.6e-46 188.7 278 59.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.9e-46 188.3 341 64.5
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 9.9e-46 188.3 348 63.5
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 9.9e-46 188.3 350 64.3
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.3e-45 188.0 348 63.5
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.2e-45 187.2 350 62.9
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.9e-45 186.8 348 63.8
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.9e-45 186.8 344 64.2
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 2.9e-45 186.8 268 42.9
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.8e-45 186.4 348 63.2
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 4.9e-45 186.0 327 66.1
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 6.4e-45 185.7 352 61.6
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.4e-45 185.7 349 64.2
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 6.4e-45 185.7 344 64.0
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.1e-44 184.9 349 63.3
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.4e-44 184.5 349 63.3
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.4e-44 184.5 271 57.2
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.2e-44 183.0 348 57.8
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 5.4e-44 182.6 349 63.0
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.4e-44 182.6 348 63.8
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.2e-43 181.4 346 62.1
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.6e-43 181.0 349 61.0
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 2.7e-43 180.3 348 63.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.5e-43 179.9 344 59.9
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 6.0e-43 179.1 101 84.2
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 7.8e-43 178.7 105 81.9
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.8e-43 178.7 104 85.6
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.0e-42 176.8 347 60.5
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.0e-42 176.8 347 60.5
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.6e-42 175.6 368 61.7
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.9e-41 174.1 99 81.8
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.3e-40 171.4 368 54.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 2.8e-40 170.2 348 61.8
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 2.8e-40 170.2 98 80.6
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.8e-40 170.2 346 62.1
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.6e-40 169.9 349 59.0
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 4.8e-40 169.5 97 81.4
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.1e-39 168.3 97 80.4
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-39 168.3 351 55.3
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-39 168.3 351 55.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.1e-39 166.8 267 51.3
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.3e-39 166.0 100 82.0
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 6.9e-39 165.6 95 80.0
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.2e-38 164.9 348 61.5
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.5e-38 164.5 344 59.0
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.5e-38 164.5 106 77.4
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.8e-38 162.5 348 62.4
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.6e-38 162.2 96 82.3
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.7e-37 161.0 96 81.2
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 4.9e-37 159.5 346 62.1
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.4e-37 159.1 349 62.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.4e-36 157.9 251 57.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 3.2e-36 156.8 94 79.8
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.9e-35 152.1 250 57.2
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.0e-34 151.8 81 85.2
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 7.4e-33 145.6 267 50.2
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.8e-32 143.7 267 50.2
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.0e-30 137.5 91 65.9
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.7e-29 134.4 274 47.1
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 4.9e-29 132.9 354 53.7
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 7.1e-28 129.0 334 55.1
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.0e-27 125.9 306 55.9
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.8e-26 124.4 82 73.2
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 9.0e-23 112.1 84 65.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.0e-22 110.9 73 71.2
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 3.4e-22 110.2 129 58.1
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.7e-21 107.8 120 95.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 7.9e-19 99.0 79 58.2
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 5.7e-17 92.8 271 43.5
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 7.4e-17 92.4 89 49.4
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.3e-16 91.7 50 78.0
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.2e-16 90.9 50 88.0
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.4e-15 88.2 73 58.9
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 1.8e-15 87.8 50 86.0
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 8.5e-13 79.0 103 48.5
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.9e-12 77.8 42 88.1
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 1.9e-12 77.8 43 79.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.5e-12 77.4 285 57.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 3.2e-12 77.0 49 77.6
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 7.2e-12 75.9 103 46.6
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-10 72.0 40 80.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 6.3e-08 62.8 39 76.9
Ciclev10027751m.g Citrus clementina HOM05D000517 ORTHO05D003374 5.9e-06 56.2 104 35.6


User provided reference genes

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