Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.2e-158 563.1 298 100.0
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.2e-98 362.5 304 71.7
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 4.1e-61 239.2 330 52.1
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.9e-59 233.0 334 51.5
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-56 224.6 336 47.3
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 4.0e-56 222.6 336 49.1
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 6.3e-54 215.3 307 50.5
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-53 214.2 328 45.4
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.7e-52 209.9 332 47.6
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 7.7e-52 208.4 317 51.7
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.0e-51 208.0 320 47.5
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-51 208.0 335 47.5
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.0e-51 208.0 335 47.5
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 3.8e-51 206.1 333 48.3
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 6.5e-51 205.3 337 47.5
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.9e-50 203.8 338 45.0
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-50 203.8 335 47.2
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.9e-50 203.8 330 43.0
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.5e-50 202.2 329 46.8
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.2e-49 201.1 297 47.1
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.6e-49 199.5 337 47.2
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.0e-48 198.0 338 46.4
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.0e-48 198.0 338 45.9
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.2e-47 194.5 335 45.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.4e-47 192.6 317 47.6
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.8e-46 189.9 271 46.5
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 8.3e-46 188.3 331 47.1
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 1.4e-45 187.6 336 42.6
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 7.0e-45 185.3 337 45.7
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 9.1e-45 184.9 309 47.6
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.0e-44 183.7 271 45.8
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 2.7e-44 183.3 331 47.1
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.0e-43 181.4 331 44.7
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.7e-43 180.6 337 44.5
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 2.2e-43 180.3 345 45.2
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 5.0e-43 179.1 318 45.6
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.9e-42 177.2 332 38.3
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.5e-42 176.8 316 44.9
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.2e-41 174.5 343 42.6
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.1e-41 172.2 334 42.5
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.0e-40 169.9 283 48.4
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.0e-40 169.9 342 43.6
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.0e-39 167.2 348 42.5
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.6e-39 166.8 335 43.6
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.4e-39 166.4 314 48.7
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.4e-39 166.4 317 43.5
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 3.4e-39 166.4 301 44.9
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.7e-39 165.6 333 40.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.7e-38 164.1 309 42.7
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 2.8e-38 163.3 318 42.5
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 6.3e-38 162.2 309 44.7
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 6.3e-38 162.2 309 44.7
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.3e-38 162.2 310 44.8
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.3e-38 162.2 323 48.6
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.4e-37 161.0 362 41.7
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 3.1e-37 159.8 348 43.1
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.2e-36 157.9 275 44.7
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 1.6e-36 157.5 302 43.7
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 1.3e-35 154.5 305 44.3
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 2.9e-35 153.3 327 40.4
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 3.8e-35 152.9 348 35.9
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 9.5e-34 148.3 334 43.1
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.6e-33 147.5 304 44.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.1e-33 147.1 226 45.6
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.6e-33 146.4 326 39.3
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.6e-33 146.4 324 44.4
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 6.1e-33 145.6 345 40.3
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 8.0e-33 145.2 313 43.1
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-32 144.8 303 43.6
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.8e-32 144.1 349 40.7
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.3e-32 143.7 342 35.7
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.0e-32 143.3 314 45.2
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 5.2e-32 142.5 330 39.1
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 5.2e-32 142.5 322 41.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 5.2e-32 142.5 331 37.8
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 6.8e-32 142.1 331 40.8
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.5e-31 141.0 340 38.2
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.0e-31 140.6 342 37.1
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 3.4e-31 139.8 341 37.5
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.5e-31 138.7 369 37.7
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 9.8e-31 138.3 311 36.3
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.3e-30 137.9 199 48.2
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.7e-30 137.5 338 39.3
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.9e-30 136.7 280 43.9
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.4e-30 135.6 339 37.8
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 6.4e-30 135.6 300 41.0
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.4e-29 133.7 299 43.5
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.4e-29 133.7 299 43.5
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 3.2e-29 133.3 331 38.1
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.0e-28 130.6 324 41.7
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.0e-28 130.6 326 39.9
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.7e-28 130.2 315 41.9
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.5e-28 129.8 323 41.2
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 4.6e-28 129.4 315 41.6
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.6e-28 129.4 315 41.6
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 4.6e-28 129.4 265 42.3
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 5.9e-28 129.0 302 41.1
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.8e-28 128.6 315 41.6
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.7e-27 127.5 300 36.3
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.7e-27 127.5 316 41.5
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.7e-27 127.5 326 35.6
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 3.0e-27 126.7 340 39.7
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 3.0e-27 126.7 318 40.9
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 6.6e-27 125.6 355 37.5
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.6e-27 125.6 298 35.9
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.6e-27 125.2 326 35.6
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.6e-27 125.2 326 35.6
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 8.6e-27 125.2 326 35.6
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 2.5e-26 123.6 313 36.1
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 7.3e-26 122.1 355 36.9
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 2.8e-25 120.2 287 36.6
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 8.0e-25 118.6 299 34.4
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.8e-24 117.5 329 35.3
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 3.4e-23 113.2 316 38.3
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 5.8e-23 112.5 201 46.8
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 2.9e-22 110.2 301 37.2
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.4e-21 107.8 307 37.1
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 2.4e-21 107.1 327 36.4
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 9.2e-21 105.1 329 33.4
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.2e-20 104.8 317 36.3
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.3e-19 101.3 335 34.6
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.3e-19 100.5 277 39.0
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 8.6e-19 98.6 291 30.9
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 8.6e-19 98.6 323 33.4
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.1e-18 98.2 327 33.9
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.9e-18 97.4 335 34.0
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.9e-18 97.4 326 33.7
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 2.5e-18 97.1 345 36.2
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 4.3e-18 96.3 325 33.8
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 4.3e-18 96.3 325 33.8
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 7.3e-18 95.5 321 33.3
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 9.5e-18 95.1 335 34.0
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.2e-17 94.7 333 33.9
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-17 94.4 327 33.3
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 2.1e-17 94.0 324 34.9
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 3.6e-17 93.2 317 36.9
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.3e-16 90.5 190 47.4
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 4.0e-16 89.7 316 32.9
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 5.2e-16 89.4 327 35.8
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 5.2e-16 89.4 322 32.9
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.6e-15 87.0 305 37.0
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 7.1e-13 79.0 352 32.1
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 2.1e-12 77.4 351 29.6
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 6.6e-11 72.4 387 32.0
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 6.6e-11 72.4 312 31.4
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.6e-09 67.8 106 43.4
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 1.8e-08 64.3 46 65.2
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.3e-08 63.9 104 41.3
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 2.3e-08 63.9 272 31.2
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 4.0e-08 63.2 248 29.0
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 8.9e-08 62.0 252 29.4
Peaxi162Scf00038g01811 Petunia axillaris HOM05D001488 ORTHO05D001456 9.9e-07 58.5 230 28.3
Actinidia32178 Actinidia chinensis HOM05D001488 ORTHO05D001456 3.8e-06 56.6 247 26.7
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.9e-06 56.2 149 35.6
unitig_22.g5564 Utricularia gibba HOM05D004533 ORTHO05D005347 4.9e-06 56.2 270 28.9
CDE05G0386 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 6.4e-06 55.8 98 36.7
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 8.4e-06 55.5 297 34.7


User provided reference genes

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