Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 3.4e-250 867.8 435 100.0
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.1e-166 590.5 473 67.4
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.3e-161 573.5 475 65.1
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 6.4e-148 528.1 506 60.3
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 2.0e-141 506.5 496 58.7
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.0e-132 477.6 502 54.6
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.1e-131 474.2 509 55.0
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.4e-131 473.8 500 56.6
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 3.5e-130 469.2 509 54.6
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.0e-129 466.1 509 55.8
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 3.9e-129 465.7 501 54.3
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.4e-126 457.2 529 53.3
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.1e-126 456.1 508 52.2
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 4.5e-125 452.2 501 52.5
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.0e-124 451.1 497 53.3
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.0e-121 441.0 483 54.7
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.3e-121 440.7 483 54.5
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.8e-121 440.3 508 52.2
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.5e-120 437.2 505 52.3
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 4.3e-120 435.6 510 51.2
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 5.7e-120 435.3 508 52.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 7.4e-120 434.9 495 53.7
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.3e-119 434.1 467 55.2
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.8e-119 433.0 501 51.3
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.7e-119 432.6 491 50.9
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 6.3e-119 431.8 504 51.2
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.2e-117 427.6 445 56.2
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.6e-117 426.4 489 50.9
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.0e-116 424.5 506 50.0
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.3e-116 424.1 505 49.9
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.3e-116 424.1 487 53.0
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.7e-116 423.7 487 51.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.2e-116 423.3 522 50.8
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.2e-116 423.3 470 53.6
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 2.9e-116 422.9 497 52.3
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 5.0e-116 422.2 485 54.2
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.9e-114 414.8 484 52.9
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 2.3e-113 413.3 484 52.7
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.3e-113 413.3 484 52.7
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.3e-113 413.3 484 52.7
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 3.9e-113 412.5 479 53.0
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.1e-113 412.1 484 52.9
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.7e-111 407.1 439 53.3
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.2e-111 406.8 438 54.3
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 2.8e-111 406.4 510 50.0
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 8.2e-111 404.8 507 49.9
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.0e-109 400.2 455 53.4
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.3e-108 397.5 494 49.8
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 2.2e-108 396.7 509 49.5
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 3.8e-108 396.0 475 53.7
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 6.5e-108 395.2 481 50.1
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.1e-107 394.4 529 49.0
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.9e-107 393.7 492 49.0
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 4.2e-107 392.5 481 50.1
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 2.7e-106 389.8 473 51.8
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 5.1e-105 385.6 460 50.7
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 5.1e-105 385.6 479 50.1
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 4.4e-104 382.5 497 49.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 7.4e-104 381.7 391 54.7
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 4.8e-103 379.0 482 48.1
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 7.0e-102 375.2 455 50.1
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 3.5e-101 372.9 477 49.3
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 7.7e-101 371.7 377 54.9
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.3e-100 370.9 478 49.2
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 8.5e-100 368.2 377 54.4
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.1e-99 367.9 478 48.3
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.5e-99 367.5 477 49.1
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 2.5e-99 366.7 575 43.7
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 3.2e-99 366.3 481 47.6
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.2e-98 364.4 467 50.1
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.6e-98 364.0 424 51.7
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.7e-98 363.2 368 55.4
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 4.7e-98 362.5 497 46.9
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 4.7e-98 362.5 381 53.8
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.0e-97 359.8 455 49.5
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 3.3e-96 356.3 480 47.1
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 8.2e-95 351.7 482 46.5
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.8e-94 350.5 392 55.4
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 3.1e-94 349.7 478 47.5
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.3e-92 344.4 434 48.4
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.7e-92 344.0 388 51.0
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.7e-92 344.0 348 56.6
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 4.2e-91 339.3 419 49.6
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 9.4e-91 338.2 393 50.9
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 2.7e-90 336.7 506 44.7
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 3.0e-89 333.2 418 51.0
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.8e-89 331.6 381 51.2
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 2.6e-88 330.1 365 54.0
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 5.7e-88 328.9 363 50.7
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 3.7e-87 326.2 509 43.6
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 9.1e-86 321.6 333 56.2
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 9.4e-83 311.6 440 46.6
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 9.4e-83 311.6 293 59.7
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 2.1e-82 310.5 337 54.6
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 2.7e-82 310.1 339 55.2
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 6.1e-82 308.9 335 54.0
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.0e-81 308.1 333 54.7
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 3.0e-81 306.6 330 53.9
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 5.7e-80 302.4 441 45.4
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.3e-79 301.2 354 50.6
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 4.9e-79 299.3 421 44.4
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 5.4e-78 295.8 315 53.3
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 7.0e-78 295.4 315 53.3
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 9.1e-78 295.0 333 52.9
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.7e-76 290.8 246 65.0
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 8.6e-76 288.5 445 43.6
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 8.6e-76 288.5 436 45.2
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 3.0e-73 280.0 321 51.4
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.6e-72 276.9 424 44.6
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 4.1e-70 269.6 327 52.0
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.6e-66 257.7 154 80.5
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.4e-65 254.6 438 42.7
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.2e-64 251.5 470 38.9
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 2.2e-63 247.3 446 40.1
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.9e-62 244.2 372 43.5
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.0e-61 240.7 386 45.3
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.8e-58 230.3 304 45.4
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.4e-56 223.4 210 58.1
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 9.8e-56 221.9 400 40.2
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 9.8e-56 221.9 407 39.3
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.6e-53 214.5 391 39.9
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 2.3e-52 210.7 363 43.8
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 1.6e-50 204.5 238 47.9
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 6.2e-50 202.6 363 40.8
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.7e-47 193.4 317 42.6
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 3.9e-44 183.3 218 47.2
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.8e-42 177.2 108 78.7
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 4.2e-38 163.3 197 49.7
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 3.1e-33 147.1 217 41.5
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.4e-32 143.7 384 33.9
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.9e-31 140.6 226 39.4
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.9e-31 140.6 219 36.1
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.9e-27 127.9 161 40.4
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 1.4e-25 121.7 107 56.1
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.3e-23 115.2 106 46.2
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.8e-23 113.6 85 67.1
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.6e-21 108.2 70 75.7
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 5.1e-20 103.2 236 36.0
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 1.8e-09 68.2 52 67.3


User provided reference genes

Program Settings