Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 8.3e-238 826.6 414 100.0
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.9e-137 491.9 408 66.9
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.0e-134 484.2 417 65.7
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 8.6e-102 374.8 413 53.5
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.4e-96 357.5 397 52.6
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.7e-89 334.0 338 54.7
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 3.8e-89 332.8 364 51.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 9.6e-85 318.2 365 49.9
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.3e-84 317.8 341 51.9
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.4e-83 313.5 342 51.8
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.5e-82 310.8 334 51.2
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 9.9e-82 308.1 426 45.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.8e-81 306.2 412 45.6
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 8.4e-81 305.1 339 51.0
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.1e-80 304.7 341 51.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.9e-80 303.9 344 49.4
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.9e-80 303.9 401 45.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.4e-80 303.5 381 46.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.2e-80 302.8 369 47.7
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.2e-79 301.2 381 46.7
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 7.9e-79 298.5 340 49.4
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 7.9e-79 298.5 412 45.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.0e-78 298.1 369 48.0
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.0e-78 298.1 365 48.8
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 2.3e-78 297.0 341 50.7
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.3e-78 297.0 386 45.3
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 3.0e-78 296.6 379 45.9
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.0e-78 296.6 391 45.5
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 5.1e-78 295.8 322 50.3
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 6.7e-78 295.4 410 43.7
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 8.7e-78 295.0 298 53.7
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 8.7e-78 295.0 315 50.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.5e-77 294.3 334 48.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.5e-77 293.5 339 48.7
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 4.3e-77 292.7 296 52.4
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 5.6e-77 292.4 339 48.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 9.6e-77 291.6 339 47.8
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.3e-76 291.2 341 49.6
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.1e-76 290.4 421 45.4
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.1e-76 290.4 406 44.1
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.8e-76 290.0 341 48.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.8e-76 290.0 403 43.9
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.7e-76 289.7 295 52.2
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-75 288.1 363 47.1
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.3e-75 285.8 337 48.1
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 5.3e-75 285.8 419 43.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.5e-74 284.3 333 48.9
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.5e-74 284.3 417 43.4
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-74 284.3 388 44.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.0e-74 283.9 391 43.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.6e-74 283.5 407 44.0
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.6e-74 283.5 372 46.2
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.4e-74 283.1 339 47.8
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.8e-74 282.3 399 42.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 7.6e-74 282.0 374 45.7
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.6e-74 282.0 336 47.0
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.6e-74 282.0 338 46.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 7.6e-74 282.0 407 42.8
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.9e-73 280.0 371 45.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 6.5e-73 278.9 339 44.5
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 6.5e-73 278.9 407 42.8
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 6.5e-73 278.9 358 43.6
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.4e-72 277.7 339 46.0
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.4e-72 277.7 339 46.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.4e-72 277.7 342 48.2
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.5e-72 276.9 382 45.0
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.2e-72 276.6 342 47.4
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 9.3e-72 275.0 340 45.3
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 9.3e-72 275.0 382 44.5
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.2e-71 274.6 298 50.3
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.6e-71 274.2 340 46.2
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.6e-71 272.7 405 42.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.3e-70 271.2 341 45.7
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.3e-69 266.2 337 43.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 4.3e-69 266.2 337 43.9
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 7.4e-69 265.4 343 45.8
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.8e-68 262.7 303 47.5
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 9.0e-67 258.5 337 44.5
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-66 258.1 338 44.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.5e-66 256.1 338 44.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.5e-66 256.1 338 44.1
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 7.6e-66 255.4 339 44.2
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 7.6e-66 255.4 338 44.1
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 7.6e-66 255.4 339 43.4
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-65 254.6 339 44.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.3e-65 254.6 339 44.2
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.7e-65 254.2 337 42.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 6.5e-65 252.3 291 47.4
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.4e-64 251.1 371 41.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 3.2e-64 250.0 371 41.5
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-63 247.7 335 43.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-63 247.7 337 42.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.1e-63 247.3 338 42.9
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.7e-63 246.9 368 41.0
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 3.6e-63 246.5 335 43.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.6e-63 246.5 303 43.9
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.6e-63 246.5 358 42.7
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.1e-63 245.7 341 42.8
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.0e-62 245.0 338 43.2
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-62 245.0 337 42.4
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.0e-62 243.4 336 42.6
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 3.0e-62 243.4 368 41.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 4.3e-61 239.6 393 39.4
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.4e-61 238.8 299 46.2
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.2e-60 237.3 414 39.6
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.8e-60 236.9 341 41.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 6.3e-60 235.7 312 43.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 8.2e-60 235.3 341 40.2
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.4e-59 234.6 344 40.7
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.4e-59 234.6 338 39.9
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-59 234.2 342 40.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 4.1e-59 233.0 332 41.9
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.5e-58 231.1 341 40.5
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.5e-58 229.6 338 40.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.7e-58 228.8 392 37.0
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-56 224.6 308 43.2
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.7e-55 220.3 386 39.9
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 3.6e-55 219.9 334 40.4
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.6e-55 219.9 293 41.0
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.1e-51 208.4 274 47.4
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.1e-51 208.4 273 46.9
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.1e-51 208.4 339 38.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.8e-51 207.6 232 47.8
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 4.5e-50 203.0 303 42.9
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.6e-47 194.5 268 47.0
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.6e-47 193.4 237 43.5
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.4e-46 191.4 240 42.9
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.3e-46 190.7 235 45.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 5.2e-46 189.5 236 42.8
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.1e-45 188.3 236 42.8
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.5e-45 188.0 236 44.1
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.0e-45 187.6 236 43.2
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.0e-45 187.6 242 47.5
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-45 187.2 236 43.2
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.6e-45 187.2 236 42.4
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.7e-44 184.5 239 42.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.7e-44 184.5 233 43.8
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.1e-43 180.3 233 43.3
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.0e-41 175.3 131 67.2
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 3.8e-41 173.3 267 39.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.7e-39 167.2 177 49.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.0e-38 165.2 394 33.5
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.7e-36 157.9 278 39.6
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.8e-36 157.1 117 65.8
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 9.1e-35 152.1 274 33.6
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 8.5e-33 145.6 240 41.2
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-32 144.4 120 60.0
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.1e-31 141.0 212 41.5
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.7e-31 140.6 123 57.7
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.4e-30 138.3 120 58.3
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.0e-30 137.1 255 37.3
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.0e-30 137.1 252 36.5
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.8e-29 132.1 185 40.0
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.8e-28 129.8 84 72.6
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-27 127.9 77 75.3
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 3.5e-26 123.6 171 42.7
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.8e-25 120.2 232 34.9
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 4.2e-24 116.7 229 33.6
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 5.5e-24 116.3 174 38.5
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 3.6e-23 113.6 273 31.5
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.0e-22 110.2 254 34.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 7.5e-21 105.9 189 38.6
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.5e-18 97.1 145 43.4
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 7.8e-18 95.9 75 62.7
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 6.1e-15 86.3 68 58.8
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.3e-12 78.6 74 55.4
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 7.8e-10 69.3 208 30.3
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.6e-09 66.2 59 52.5
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.5e-08 65.1 118 38.1
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.9e-08 64.7 117 38.5
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 1.1e-06 58.9 271 24.0


User provided reference genes

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