Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.8e-230 800.8 408 100.0
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 5.4e-165 584.7 375 81.3
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 8.7e-163 577.4 412 73.8
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.3e-158 563.5 409 72.9
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.4e-157 559.3 413 71.7
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 8.1e-153 544.3 411 70.6
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.1e-149 533.9 402 70.4
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.4e-149 533.5 409 70.4
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.6e-148 530.0 421 67.2
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.8e-147 526.6 411 68.6
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 3.9e-147 525.4 299 85.6
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.1e-146 523.9 409 68.7
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.4e-144 516.9 300 84.0
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 9.0e-144 514.2 399 68.7
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.2e-143 513.8 300 83.3
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.0e-143 513.1 406 67.2
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.4e-143 512.3 301 82.4
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 7.6e-143 511.1 413 66.8
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.4e-141 506.9 408 66.7
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 3.2e-141 505.8 408 67.2
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 3.5e-140 502.3 399 67.9
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.3e-139 499.6 376 69.7
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.0e-139 499.2 407 66.3
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.0e-139 499.2 301 81.1
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.9e-138 496.5 409 65.0
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 3.3e-138 495.7 409 65.0
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 4.3e-138 495.4 298 79.5
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 4.3e-138 495.4 298 79.9
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 4.3e-138 495.4 394 66.8
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.3e-137 493.8 301 80.4
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.6e-137 493.4 300 79.3
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 3.7e-137 492.3 399 65.4
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 6.2e-137 491.5 300 80.3
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 8.2e-137 491.1 300 78.7
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 8.2e-137 491.1 300 78.3
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 8.2e-137 491.1 308 77.3
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-136 490.7 300 80.7
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.4e-136 490.3 414 65.0
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.8e-136 490.0 300 79.3
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 4.0e-136 488.8 298 78.9
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 5.3e-136 488.4 407 64.9
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 6.9e-136 488.0 298 78.9
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.2e-135 487.3 397 63.5
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.5e-135 486.9 299 78.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.5e-135 486.9 298 78.5
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 3.4e-135 485.7 399 65.9
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.7e-134 483.4 392 65.8
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 3.8e-134 482.3 300 79.3
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 3.8e-134 482.3 405 63.7
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 4.9e-134 481.9 288 80.9
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 4.9e-134 481.9 392 66.1
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 4.9e-134 481.9 386 66.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 6.5e-134 481.5 305 76.4
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 8.4e-134 481.1 381 64.8
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.1e-133 480.7 301 77.4
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.9e-133 479.9 401 64.1
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 1.2e-132 477.2 302 77.2
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.8e-131 473.4 299 76.3
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.3e-131 473.0 300 77.3
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 5.1e-131 471.9 317 74.1
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.5e-130 469.5 297 75.8
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.5e-130 469.5 295 75.6
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 2.5e-130 469.5 379 66.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 3.3e-130 469.2 297 77.8
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.3e-129 467.2 298 75.2
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.6e-129 466.8 298 75.5
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.6e-129 466.8 311 74.9
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 6.3e-129 464.9 297 74.7
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.2e-129 464.5 297 75.1
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-128 464.2 298 75.2
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-128 464.2 298 75.2
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.8e-128 463.4 297 74.4
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 4.1e-128 462.2 300 74.3
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 5.3e-128 461.8 297 74.7
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 5.3e-128 461.8 300 76.3
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.0e-127 459.9 393 62.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.4e-127 459.1 396 61.6
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 7.7e-127 458.0 400 61.2
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 3.8e-126 455.7 300 75.0
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 5.0e-126 455.3 313 74.1
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 3.2e-125 452.6 300 72.7
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 9.4e-125 451.1 300 71.7
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.6e-124 448.7 412 61.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.0e-123 447.6 400 59.8
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.4e-123 447.2 375 62.9
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.4e-123 447.2 392 61.5
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 6.3e-121 438.3 294 73.1
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.8e-118 429.1 411 58.9
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.9e-117 426.8 297 68.7
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 3.9e-115 419.1 270 74.1
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.4e-114 415.6 250 81.6
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.7e-114 415.2 272 73.5
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 5.7e-114 415.2 272 73.5
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 8.2e-113 411.4 297 66.3
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.3e-112 408.7 386 59.1
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.5e-101 374.0 219 81.7
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 6.8e-99 365.2 324 62.3
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 2.0e-98 363.6 289 61.2
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.6e-98 363.2 284 60.9
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.8e-96 357.1 295 55.9
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 2.7e-95 353.2 295 58.6
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.0e-94 351.3 294 55.8
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-93 347.1 295 55.3
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 2.5e-93 346.7 295 55.6
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-93 346.3 294 55.1
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 7.2e-93 345.1 292 54.5
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.6e-92 344.0 289 59.2
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 6.1e-92 342.0 295 53.9
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-91 341.3 295 53.9
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.0e-91 341.3 292 54.1
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.3e-91 340.1 295 54.6
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.3e-91 340.1 295 53.2
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 5.2e-91 339.0 295 53.6
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 6.8e-91 338.6 293 54.6
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.2e-90 337.8 326 57.7
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-90 337.4 295 54.6
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.5e-90 337.4 295 54.9
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.4e-90 336.3 295 53.6
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.4e-90 336.3 295 54.2
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 7.5e-90 335.1 295 54.9
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.5e-90 335.1 293 53.9
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.8e-89 333.2 294 54.1
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.8e-89 333.2 217 71.9
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.8e-89 332.4 300 52.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-89 332.4 295 53.9
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-88 331.3 295 53.6
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-88 331.3 295 53.6
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.1e-88 329.3 292 51.4
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.7e-87 326.6 296 52.7
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 5.9e-87 325.5 292 53.1
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.7e-86 323.9 294 52.0
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.8e-86 322.8 295 53.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.6e-86 322.0 291 52.6
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.6e-86 321.6 296 53.0
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.9e-85 320.5 272 55.5
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.9e-85 320.5 296 52.7
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-85 320.1 296 51.7
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-85 319.7 296 52.4
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-83 313.9 295 51.5
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.8e-83 313.9 297 48.8
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 9.2e-80 301.6 275 51.6
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 7.8e-79 298.5 276 51.4
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 2.8e-76 290.0 236 63.6
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 9.8e-74 281.6 296 49.3
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 6.4e-73 278.9 282 49.6
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 4.1e-72 276.2 275 49.8
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-70 270.4 349 40.7
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 8.6e-70 268.5 291 51.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-67 261.2 244 52.9
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 7.3e-61 238.8 239 58.6
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.6e-58 228.8 219 51.6
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.9e-57 226.9 197 54.8
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.9e-57 226.9 197 54.8
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 9.2e-56 221.9 298 41.3
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 5.1e-54 216.1 178 60.7
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.5e-50 204.5 315 38.1
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 4.2e-40 169.9 128 56.2
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 3.0e-38 163.7 128 54.7
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 3.0e-38 163.7 128 54.7
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 5.1e-38 162.9 148 52.7
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.6e-38 162.5 294 33.7
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.4e-32 144.8 83 84.3
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-31 140.6 111 53.2
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-30 137.5 152 48.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 2.1e-23 114.4 94 63.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 2.1e-23 114.4 298 29.9
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-13 82.0 58 70.7


User provided reference genes

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