Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 9.6e-211 736.5 353 100.0
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 5.7e-163 577.8 338 82.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 5.4e-161 571.2 343 80.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 2.0e-160 569.3 343 78.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 7.3e-158 560.8 336 78.9
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.1e-157 557.8 344 78.8
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.4e-156 556.6 341 77.1
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.7e-154 548.5 344 77.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 6.4e-154 547.7 343 75.5
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 3.5e-152 542.0 344 77.3
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.0e-151 538.9 344 75.3
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 3.3e-150 535.4 342 75.7
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.1e-149 532.7 342 73.7
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.2e-149 531.2 342 73.4
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.0e-149 530.8 342 73.4
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.4e-148 530.0 344 74.1
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.2e-147 526.9 339 74.9
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.2e-147 526.9 344 73.5
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.2e-147 526.9 344 71.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.0e-147 526.2 339 75.5
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.8e-147 524.6 342 73.7
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 7.5e-147 524.2 343 73.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 7.5e-147 524.2 343 72.3
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 9.8e-147 523.9 338 74.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.3e-146 523.5 343 73.5
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.9e-146 522.3 343 72.9
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.9e-146 521.5 343 72.6
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 8.3e-146 520.8 347 72.3
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 7.0e-145 517.7 344 73.8
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 7.0e-145 517.7 343 72.9
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.6e-144 516.5 344 72.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.0e-144 516.2 346 71.4
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.0e-144 516.2 343 72.6
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.7e-144 515.8 346 73.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 2.7e-144 515.8 343 72.0
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 6.0e-144 514.6 343 72.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 7.8e-144 514.2 343 73.2
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 7.8e-144 514.2 343 72.6
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.0e-143 513.8 343 70.6
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.0e-143 513.8 338 73.1
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 2.3e-143 512.7 341 72.1
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.0e-143 512.3 338 72.8
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 6.6e-143 511.1 344 71.5
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 8.6e-143 510.8 338 72.8
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.9e-142 509.6 340 70.9
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 7.3e-142 507.7 344 71.2
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 9.5e-142 507.3 341 71.8
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 3.1e-140 502.3 339 69.3
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.2e-140 501.5 344 70.9
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 8.9e-140 500.7 343 70.0
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 3.4e-139 498.8 343 70.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 4.9e-138 495.0 343 69.7
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.1e-137 493.8 343 70.8
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 5.4e-137 491.5 342 70.5
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.0e-135 487.3 335 69.9
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.5e-134 483.4 341 67.4
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 7.3e-134 481.1 349 66.2
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.2e-133 478.0 343 67.3
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.1e-132 475.7 343 67.3
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 5.2e-132 474.9 343 66.8
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-130 470.3 344 66.3
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.7e-130 469.9 343 65.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 4.9e-130 468.4 343 65.6
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 6.4e-130 468.0 343 66.5
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 5.4e-129 464.9 343 65.9
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.1e-129 464.5 344 66.0
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 7.1e-129 464.5 348 64.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-128 462.6 344 65.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-128 462.2 344 65.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 7.8e-128 461.1 344 65.1
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 7.8e-128 461.1 341 65.7
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.3e-127 460.3 342 63.7
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.0e-127 459.1 342 64.0
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.0e-127 459.1 344 63.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 3.9e-127 458.8 344 64.8
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 3.9e-127 458.8 344 64.8
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 5.1e-127 458.4 344 64.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 6.6e-127 458.0 344 64.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 6.6e-127 458.0 344 64.0
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 8.6e-127 457.6 343 65.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.9e-126 456.4 343 63.8
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 4.3e-126 455.3 314 70.1
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.6e-126 454.9 332 65.4
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.6e-125 452.2 344 65.1
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 8.9e-124 447.6 339 63.4
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-123 447.2 334 63.2
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-123 447.2 334 62.3
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.0e-123 446.4 334 63.8
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.6e-123 446.0 334 62.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 3.4e-123 445.7 334 62.6
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 9.9e-123 444.1 344 63.7
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-122 443.7 334 62.3
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 8.4e-122 441.0 334 63.5
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-121 440.3 335 63.9
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.2e-121 439.1 382 59.9
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 5.4e-121 438.3 343 62.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.4e-121 438.3 346 62.7
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 5.4e-121 438.3 334 62.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-120 435.6 338 62.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 6.0e-120 434.9 343 63.6
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 6.0e-120 434.9 344 60.5
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.7e-119 433.3 339 61.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 9.6e-118 427.6 344 62.5
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-115 419.5 344 60.2
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 3.8e-114 415.6 344 58.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 9.3e-113 411.0 340 58.8
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.7e-112 409.5 343 56.3
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.0e-111 407.5 366 60.7
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.3e-111 407.1 334 60.2
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 4.3e-110 402.1 312 60.6
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 6.9e-108 394.8 343 53.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 7.1e-105 384.8 322 59.0
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-101 372.9 344 55.8
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 7.1e-97 358.2 343 56.9
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 7.4e-94 348.2 263 63.9
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.3e-93 347.4 301 56.8
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-92 344.4 322 55.6
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.5e-86 323.9 228 67.1
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 7.4e-86 321.6 239 62.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.1e-84 317.8 306 54.6
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 3.4e-83 312.8 239 66.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.0e-79 299.7 196 74.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.4e-76 290.0 343 46.1
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.4e-73 280.8 378 42.6
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.2e-73 279.3 342 42.7
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.2e-72 277.7 200 70.0
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.1e-72 276.9 200 70.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 2.6e-67 260.0 340 42.4
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-59 234.6 146 71.2
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 7.7e-59 231.9 222 55.9
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.6e-56 223.0 219 54.8
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 6.1e-56 222.2 145 70.3
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 6.6e-42 175.6 110 70.9
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.3e-39 167.2 156 55.8
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 4.0e-39 166.4 335 34.3
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-35 153.7 181 48.6
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.3e-31 140.6 75 85.3
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 5.8e-30 136.0 76 78.9
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.8e-30 136.0 94 74.5
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.3e-29 132.1 109 62.4
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.2e-27 128.3 83 72.3
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.5e-25 121.3 75 74.7
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.3e-23 114.0 99 57.6
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-22 110.9 76 64.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 4.4e-22 109.8 76 64.5
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 6.4e-21 105.9 106 51.9
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.6e-19 101.3 82 59.8
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-19 101.3 96 54.2
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-19 100.9 77 58.4
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-18 98.2 185 35.7
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.3e-18 97.4 54 72.2
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 6.6e-18 95.9 57 75.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 9.5e-17 92.0 56 73.2
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 9.9e-14 82.0 83 47.0
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 1.7e-13 81.3 112 42.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 4.1e-12 76.6 68 51.5
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-09 68.6 53 58.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 9.6e-09 65.5 53 52.8
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-08 65.1 83 43.4
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 6.2e-08 62.8 83 42.2
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.1e-07 62.0 42 64.3
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 4.0e-07 60.1 45 57.8
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 9.0e-07 58.9 57 52.6
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.8e-06 56.2 82 36.6


User provided reference genes

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