Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.5e-127 459.5 234 100.0
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 4.7e-105 384.8 216 89.8
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.6e-103 379.0 218 88.5
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 3.4e-103 378.6 218 88.5
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 7.5e-103 377.5 217 88.0
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 7.5e-103 377.5 216 88.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 7.5e-103 377.5 218 87.6
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 7.5e-103 377.5 218 88.1
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.8e-103 377.1 218 88.1
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.8e-103 377.1 218 88.1
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 9.8e-103 377.1 216 88.4
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.3e-102 376.7 218 87.6
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.3e-102 376.7 218 87.6
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.3e-102 376.7 218 87.6
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-102 376.3 218 87.6
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.9e-102 375.6 218 87.2
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 2.9e-102 375.6 218 87.2
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 3.7e-102 375.2 216 87.5
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 3.7e-102 375.2 216 87.5
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.7e-102 375.2 218 87.2
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.7e-102 375.2 218 87.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.7e-102 375.2 218 87.6
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.7e-102 375.2 218 87.6
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 3.7e-102 375.2 216 88.0
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 3.7e-102 375.2 218 86.7
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 4.9e-102 374.8 218 87.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 8.3e-102 374.0 218 87.6
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 8.3e-102 374.0 218 86.7
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 8.3e-102 374.0 218 87.2
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.1e-101 373.6 218 87.2
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.1e-101 373.6 218 86.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.4e-101 373.2 218 86.7
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.4e-101 373.2 218 87.2
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.4e-101 373.2 218 86.7
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.9e-101 372.9 218 87.2
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.9e-101 372.9 218 85.8
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.2e-101 372.1 218 86.2
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 3.2e-101 372.1 218 86.7
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 5.4e-101 371.3 216 87.0
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.1e-101 370.9 218 86.7
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 7.1e-101 370.9 218 86.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 7.1e-101 370.9 218 85.8
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 9.2e-101 370.5 218 87.2
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.2e-101 370.5 230 82.6
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.2e-100 370.2 216 86.1
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.2e-100 370.2 218 85.8
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.2e-100 370.2 218 86.2
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.6e-100 369.8 216 87.0
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.6e-100 369.8 218 86.2
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.1e-100 369.4 216 86.6
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.1e-100 369.4 218 86.2
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 2.7e-100 369.0 217 86.6
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.7e-100 369.0 218 85.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.7e-100 369.0 218 85.3
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.0e-99 367.1 218 86.2
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.3e-99 366.7 216 84.7
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.7e-99 366.3 219 85.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.3e-99 365.9 218 85.8
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 3.0e-99 365.5 219 85.4
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 3.9e-99 365.2 218 84.9
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 5.1e-99 364.8 218 85.8
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 8.6e-99 364.0 219 85.4
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 8.6e-99 364.0 219 85.4
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.9e-98 362.8 216 85.2
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 4.3e-98 361.7 218 83.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 5.6e-98 361.3 219 83.1
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 7.3e-98 360.9 217 83.4
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 7.3e-98 360.9 218 83.9
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 7.3e-98 360.9 217 83.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.2e-97 360.1 216 83.3
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.2e-97 360.1 216 83.3
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.6e-97 359.8 218 82.6
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.1e-97 359.4 218 85.3
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 4.7e-97 358.2 218 83.0
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 4.7e-97 358.2 218 83.0
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 6.2e-97 357.8 216 83.3
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 6.2e-97 357.8 215 84.2
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.1e-96 357.1 215 84.2
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.4e-96 356.7 218 82.6
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-96 356.7 218 82.6
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.4e-96 356.7 218 83.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.4e-96 356.7 216 83.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.8e-96 356.3 213 84.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.8e-96 356.3 217 85.3
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 5.2e-96 354.8 218 82.1
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 5.2e-96 354.8 218 82.1
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.2e-95 353.6 218 81.2
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.0e-95 352.8 217 83.4
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.6e-95 352.4 206 87.9
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.4e-95 351.7 216 84.3
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.4e-95 351.7 216 84.3
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 5.8e-95 351.3 218 80.7
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 5.8e-95 351.3 218 81.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 5.8e-95 351.3 218 84.4
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 7.6e-95 350.9 218 81.7
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-94 349.7 216 83.8
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.8e-94 348.6 218 81.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.9e-94 348.2 218 78.9
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 8.4e-94 347.4 218 78.9
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.1e-93 347.1 218 80.3
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.6e-92 343.2 216 81.9
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 8.6e-91 337.4 218 79.8
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.4e-88 330.1 218 80.3
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.4e-88 329.3 188 87.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.4e-88 329.3 189 87.3
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 7.6e-87 324.3 188 86.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 8.4e-86 320.9 216 78.7
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 5.4e-85 318.2 188 85.6
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 6.0e-84 314.7 189 83.1
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.0e-83 313.9 200 80.0
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 5.1e-83 311.6 187 82.4
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 6.6e-83 311.2 218 70.6
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.9e-82 309.7 220 77.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-80 303.9 218 73.9
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 3.9e-75 285.4 166 86.7
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 3.9e-75 285.4 177 80.2
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 6.7e-75 284.6 215 70.2
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.9e-74 283.1 217 69.6
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 5.3e-72 275.0 166 83.7
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 9.3e-69 264.2 242 62.0
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.3e-65 253.8 216 64.8
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.1e-64 250.8 212 59.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.4e-64 250.4 213 59.2
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 7.6e-63 244.6 212 56.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.0e-62 244.2 163 78.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 5.5e-61 238.4 212 57.5
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.6e-58 227.6 120 92.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 6.9e-56 221.5 218 50.0
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.9e-54 216.1 161 73.9
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 4.2e-53 212.2 143 78.3
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-52 209.9 148 72.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 5.1e-51 205.3 217 49.8
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.4e-48 196.4 217 49.3
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 3.1e-48 196.1 219 53.4
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 8.5e-46 188.0 207 45.4
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.6e-44 183.7 206 44.7
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 7.4e-42 174.9 98 87.8
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 4.8e-41 172.2 241 41.1
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-40 171.0 218 48.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.9e-38 162.9 170 57.6
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 4.8e-33 145.6 216 44.9
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.2e-31 141.0 96 78.1
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-31 140.6 99 74.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.7e-30 137.1 73 93.2
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.9e-29 133.7 197 38.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.7e-28 129.8 92 72.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.0e-27 126.3 136 55.9
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.5e-26 121.7 93 68.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 6.3e-25 118.6 60 90.0
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 3.5e-23 112.8 73 80.8
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 4.5e-23 112.5 82 69.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 2.5e-21 106.7 60 85.0
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.2e-12 77.8 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 5.7e-10 68.9 68 60.3
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.4e-08 63.5 37 78.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 5.9e-07 58.9 30 90.0
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.3e-06 57.8 44 61.4


User provided reference genes

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