Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 0.0e+00 2204.5 1104 100.0
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 0.0e+00 1298.1 794 81.5
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 3.2e-305 1052.0 892 63.7
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 2.8e-293 1012.3 757 68.3
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 3.0e-274 949.1 866 59.1
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 5.6e-241 838.6 866 54.2
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 3.2e-228 796.2 863 50.2
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 2.6e-222 776.5 865 50.1
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.0e-221 774.6 815 51.5
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 3.6e-219 766.1 804 51.6
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.7e-216 757.3 908 48.0
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.7e-213 747.3 890 47.5
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.7e-213 747.3 800 49.8
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.2e-213 746.9 910 48.2
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 3.2e-212 743.0 909 45.5
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 5.5e-212 742.3 898 47.7
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.1e-211 740.3 800 49.8
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.0e-210 736.5 895 46.7
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.0e-205 721.5 901 45.3
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.2e-203 714.5 897 45.7
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 2.1e-203 713.8 897 45.2
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 5.2e-202 709.1 889 45.2
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 2.0e-201 707.2 889 45.1
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.2e-198 698.0 710 51.5
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.0e-198 697.2 886 44.6
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.0e-198 697.2 888 44.8
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 1.1e-191 674.9 914 43.9
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.1e-191 672.9 898 43.5
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 7.2e-188 662.1 900 42.2
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 6.1e-187 659.1 900 42.1
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.4e-185 652.9 893 44.3
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 4.4e-185 652.9 889 43.2
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 2.4e-183 647.1 804 45.0
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 3.1e-183 646.7 902 42.4
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.1e-180 638.3 887 43.1
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 7.2e-180 635.6 889 42.6
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 6.1e-179 632.5 890 44.4
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.5e-172 610.5 893 42.1
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 4.7e-171 606.3 899 41.8
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 6.1e-171 605.9 901 42.6
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.4e-170 604.7 897 41.4
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 2.3e-170 604.0 838 43.0
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 4.0e-170 603.2 814 42.8
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 3.4e-169 600.1 898 42.2
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 9.8e-169 598.6 893 40.6
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.7e-168 596.7 886 40.3
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 4.9e-168 596.3 908 41.1
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.9e-167 594.3 911 41.9
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 6.6e-165 585.9 905 41.7
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 1.1e-164 585.1 923 40.7
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.6e-163 580.1 911 38.3
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.0e-161 574.3 891 41.1
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 2.6e-161 573.9 780 44.7
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 4.4e-161 573.2 889 40.2
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 7.5e-161 572.4 819 40.3
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 8.3e-160 568.9 750 44.5
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 8.3e-160 568.9 882 41.6
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 3.2e-159 567.0 901 40.2
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 3.9e-157 560.1 885 41.1
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.5e-156 558.1 831 40.9
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 4.4e-153 546.6 900 40.2
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.2e-150 538.5 539 52.7
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 4.6e-150 536.6 775 39.1
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 3.0e-149 533.9 895 37.7
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.9e-148 531.2 902 37.9
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 2.5e-148 530.8 901 38.2
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.3e-148 530.0 919 36.9
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 2.1e-147 527.7 901 38.0
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 2.4e-146 524.2 792 38.3
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 6.8e-146 522.7 896 39.0
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.2e-145 521.9 888 37.8
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 2.6e-145 520.8 923 37.4
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 6.4e-144 516.2 810 39.5
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.4e-143 515.0 722 43.4
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.9e-143 514.6 803 37.7
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 9.3e-143 512.3 874 37.9
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 7.8e-142 509.2 926 37.3
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 3.9e-141 506.9 889 36.2
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 8.7e-141 505.8 930 37.6
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 1.4e-138 498.4 890 35.8
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 9.0e-138 495.7 880 35.6
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 4.2e-135 486.9 804 37.7
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 4.6e-134 483.4 884 36.3
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 6.0e-134 483.0 802 37.5
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.3e-133 481.9 899 36.6
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.1e-132 478.8 801 37.3
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.8e-131 474.2 901 36.5
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 6.9e-130 469.5 880 36.4
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.7e-128 464.9 811 39.0
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.9e-128 463.4 751 36.9
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.8e-117 428.3 772 37.6
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.5e-116 425.2 806 34.1
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.9e-111 408.3 825 36.0
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 6.1e-110 403.3 334 58.7
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 7.7e-105 386.3 384 52.3
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 6.1e-102 376.7 635 39.2
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.5e-100 372.1 408 50.2
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.8e-99 367.1 553 38.5
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.7e-96 358.6 544 40.4
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.6e-92 344.7 640 35.9
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.1e-90 339.3 797 30.2
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-90 339.0 838 32.2
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 2.4e-90 338.2 818 32.2
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 7.7e-89 333.2 542 37.8
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.1e-82 310.8 465 40.0
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.9e-79 302.0 911 29.5
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.2e-76 292.7 628 33.6
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.5e-76 292.4 904 28.9
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.7e-72 278.9 862 28.9
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.6e-68 265.0 519 37.0
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 4.4e-68 264.2 518 35.3
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 2.4e-58 231.9 352 38.9
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 3.2e-58 231.5 368 41.6
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 5.4e-58 230.7 446 35.9
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.0e-57 228.8 716 29.3
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-53 216.1 431 36.2
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.5e-49 201.4 676 29.0
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 5.6e-47 194.1 181 54.1
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 9.5e-47 193.4 454 33.0
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 3.6e-46 191.4 271 42.8
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-45 189.5 336 36.0
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 5.2e-45 187.6 286 40.2
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 5.8e-44 184.1 205 46.8
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.9e-40 171.4 397 30.0
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 8.6e-40 170.2 397 29.7
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.6e-39 167.5 524 29.8
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-33 149.8 324 32.1
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.5e-31 142.9 247 36.0
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 4.7e-30 137.9 211 39.8
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-25 123.2 384 30.7
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.6e-25 122.9 217 33.6
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.6e-25 122.9 217 33.6
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.1e-25 122.5 384 30.5
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 5.1e-24 117.9 161 40.4
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-19 102.8 215 34.0
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.7e-19 102.8 336 25.9
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.9e-18 99.4 375 23.5
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 7.1e-18 97.4 338 25.4
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.2e-17 96.7 414 26.8
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.4e-12 78.6 303 26.7
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 4.5e-12 78.2 338 26.0
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 2.9e-11 75.5 107 44.9
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 4.2e-10 71.6 107 43.9
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.5e-10 71.2 258 29.5
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.9e-09 67.4 187 33.2
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 8.7e-08 63.9 103 41.7
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 1.9e-07 62.8 112 36.6
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 9.6e-07 60.5 128 33.6


User provided reference genes

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