Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.6e-86 322.8 174 100.0
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 4.2e-74 281.6 196 79.1
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 82.2
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 8.2e-70 267.3 239 65.3
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 82.8
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 74.7
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 80.5
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 71.8
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 78.2
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 78.2
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 7.2e-66 254.2 171 78.4
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 9.3e-66 253.8 171 78.4
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 70.1
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 71.3
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 77.6
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 77.6
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 79.9
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.6e-65 251.9 148 81.1
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 80.5
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 71.8
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 69.5
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 71.8
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.8e-64 249.6 174 76.4
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 77.0
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 69.0
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 3.0e-64 248.8 174 76.4
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 3.9e-64 248.4 174 71.3
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 70.7
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 68.4
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 70.1
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 70.1
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.5e-63 245.7 174 67.8
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.5e-63 245.7 174 70.1
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 68.4
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 70.1
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 69.0
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 66.7
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 67.2
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 69.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 68.4
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 7.4e-63 244.2 171 74.3
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 69.5
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 9.7e-63 243.8 174 69.5
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 71.3
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.7e-62 243.0 174 67.8
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 2.2e-62 242.7 174 67.2
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 74.1
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 73.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 68.4
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 67.8
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 68.4
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 71.3
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 3.1e-61 238.8 174 68.4
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 74.1
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 1.2e-60 236.9 174 64.9
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 1.5e-60 236.5 174 75.9
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.0e-60 236.1 175 66.3
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 2.6e-60 235.7 174 73.0
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 66.1
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 66.1
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 66.1
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 66.1
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 66.1
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 2.2e-59 232.6 175 63.4
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.9e-59 232.3 174 69.5
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 65.5
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 70.7
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 64.4
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 8.5e-59 230.7 173 71.7
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.1e-58 230.3 174 64.4
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 1.1e-58 230.3 174 64.9
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.1e-58 230.3 194 61.9
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.4e-58 229.9 174 66.1
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 65.5
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 3.2e-58 228.8 174 64.4
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 3.2e-58 228.8 174 65.5
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 3.2e-58 228.8 174 64.9
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.2e-57 226.9 174 64.9
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 1.2e-57 226.9 198 59.1
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.6e-57 226.5 174 64.4
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 63.2
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 64.4
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 4.7e-57 224.9 174 62.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 4.7e-57 224.9 174 62.6
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 6.1e-57 224.6 171 70.8
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.1
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.1
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.1
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.1
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 7.9e-57 224.2 143 72.7
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.0e-56 223.8 174 62.6
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.4e-56 223.4 174 62.1
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.8e-56 223.0 174 62.6
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 1.8e-56 223.0 174 62.6
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 3.0e-56 222.2 174 61.5
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 3.9e-56 221.9 174 60.9
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 3.9e-56 221.9 174 63.2
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 3.9e-56 221.9 174 63.2
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 2.0e-55 219.5 174 62.1
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 5.7e-55 218.0 174 60.3
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 2.2e-54 216.1 174 59.8
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.2e-54 216.1 174 59.2
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.8e-54 215.7 173 59.0
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.1e-53 213.8 174 59.8
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.1e-53 213.8 174 62.1
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.0e-52 209.5 122 79.5
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 5.9e-52 208.0 175 59.4
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.3e-51 206.8 164 61.0
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 1.3e-51 206.8 164 61.0
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.3e-51 206.8 158 64.6
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.9e-51 205.7 148 65.5
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.5e-50 202.6 174 58.0
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 4.2e-50 201.8 122 73.8
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 5.5e-50 201.4 146 69.2
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 3.0e-48 195.7 176 59.1
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 5.7e-47 191.4 182 60.4
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 7.4e-47 191.0 122 71.3
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 2.0e-44 183.0 175 56.0
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 2.2e-43 179.5 171 52.0
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 1.1e-42 177.2 147 61.2
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.3e-38 163.7 173 47.4
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.8e-37 159.8 177 46.3
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 3.1e-37 159.1 173 47.4
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 5.3e-37 158.3 95 75.8
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.6e-36 156.8 94 72.3
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 4.5e-36 155.2 134 50.0
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 2.2e-35 152.9 94 70.2
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 3.0e-32 142.5 93 69.9
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-27 127.1 87 69.0
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 5.0e-27 125.2 67 82.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 7.5e-23 111.3 75 68.0
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.3e-22 110.5 96 49.0
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 8.3e-22 107.8 85 78.8
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 1.7e-19 100.1 135 40.7
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 3.8e-19 99.0 76 65.8
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 9.5e-18 94.4 80 62.5
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.2e-17 94.0 55 76.4
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.1e-17 93.2 53 79.2
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 8.0e-17 91.3 150 32.7
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.7e-14 83.6 48 77.1
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 5.4e-13 78.6 132 34.8
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.8e-12 74.7 38 84.2
Rhsim03G0260500 Rhododendron simsii HOM05D005031 ORTHO05D339361 4.0e-08 62.4 54 83.3


User provided reference genes

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