Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00854 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 3.6e-39 164.5 84 100.0
Eucgr.L02462 Eucalyptus grandis HOM05D000702 ORTHO05D001396 8.4e-12 73.6 61 68.9
Potri.002G080500 Populus trichocarpa HOM05D000702 ORTHO05D001396 1.1e-11 73.2 48 83.3
Thecc.08G130200 Theobroma cacao HOM05D000702 ORTHO05D001396 1.9e-11 72.4 48 79.2
Migut.C01052 Erythranthe guttata HOM05D000702 ORTHO05D001396 2.4e-11 72.0 48 81.2
Lj4A640T27 Lonicera japonica HOM05D000702 ORTHO05D001396 2.4e-11 72.0 48 81.2
Lj4A641T50 Lonicera japonica HOM05D000702 ORTHO05D001396 2.4e-11 72.0 48 81.2
Lj4A643T17 Lonicera japonica HOM05D000702 ORTHO05D001396 2.4e-11 72.0 48 81.2
PGR042G2229 Punica granatum HOM05D000702 ORTHO05D001396 2.4e-11 72.0 48 81.2
Sabra02G0063000 Salix brachista HOM05D000702 ORTHO05D001396 2.4e-11 72.0 48 81.2
CAN.G1347.1 Capsicum annuum HOM05D000702 ORTHO05D001396 3.2e-11 71.6 48 79.2
CAN.G1391.1 Capsicum annuum HOM05D000702 ORTHO05D001396 3.2e-11 71.6 48 79.2
Oeu021880.1 Olea europaea HOM05D000702 ORTHO05D001396 3.2e-11 71.6 48 79.2
Oeu059455.1 Olea europaea HOM05D000702 ORTHO05D001396 3.2e-11 71.6 48 79.2
SalBow7G4285 Salvia bowleyana HOM05D000702 ORTHO05D001396 3.2e-11 71.6 48 79.2
Gohir.A05G237200 Gossypium hirsutum HOM05D000702 ORTHO05D001396 4.1e-11 71.2 48 77.1
Gorai.009G248100 Gossypium raimondii HOM05D000702 ORTHO05D001396 4.1e-11 71.2 48 77.1
Manes.18G080100 Manihot esculenta HOM05D000702 ORTHO05D001396 4.1e-11 71.2 48 77.1
Manes.S092200 Manihot esculenta HOM05D000702 ORTHO05D001396 4.1e-11 71.2 48 77.1
Sed0006355 Sechium edule HOM05D000702 ORTHO05D001396 4.1e-11 71.2 48 77.1
TWI60G1507 Tripterygium wilfordii HOM05D000702 ORTHO05D001396 4.1e-11 71.2 48 77.1
CSS0007121 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 5.4e-11 70.9 48 77.1
CSS0046035 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 5.4e-11 70.9 48 77.1
Lj1g0012565 Lotus japonicus HOM05D000702 ORTHO05D001396 5.4e-11 70.9 50 74.0
PSO528G0117 Papaver somniferum HOM05D000702 ORTHO05D001396 5.4e-11 70.9 48 79.2
SGA_v2.0_scaffold52G18935 Striga asiatica HOM05D000702 ORTHO05D001396 5.4e-11 70.9 48 81.2
CANSAT25G1100 Cannabis sativa HOM05D000702 ORTHO05D001396 7.1e-11 70.5 48 77.1
Gohir.A06G046600 Gossypium hirsutum HOM05D000702 ORTHO05D001396 7.1e-11 70.5 48 77.1
MELO3C021848.2 Cucumis melo HOM05D000702 ORTHO05D001396 9.2e-11 70.1 48 77.1
CsaV3_6G034190 Cucumis sativus L. HOM05D000702 ORTHO05D001396 9.2e-11 70.1 48 77.1
FAN20G1630 Fragaria x ananassa HOM05D000702 ORTHO05D001396 9.2e-11 70.1 48 81.2
FAN27G1905 Fragaria x ananassa HOM05D000702 ORTHO05D001396 9.2e-11 70.1 48 81.2
Sc02g0005020 Simmondsia chinensis HOM05D000702 ORTHO05D001396 9.2e-11 70.1 48 81.2
GSVIVG01008827001 Vitis vinifera HOM05D000702 ORTHO05D001396 9.2e-11 70.1 48 77.1
Cc10_g12410 Coffea canephora HOM05D000702 ORTHO05D001396 1.2e-10 69.7 48 79.2
Manes.18G080200 Manihot esculenta HOM05D000702 ORTHO05D001396 1.2e-10 69.7 48 77.1
Psat5g085960 Pisum sativum HOM05D000702 ORTHO05D001396 1.2e-10 69.7 48 77.1
TPR.G13472 Trifolium pratense HOM05D000702 ORTHO05D001396 1.2e-10 69.7 48 77.1
Atru.chr13.1531 Acer truncatum HOM05D000702 ORTHO05D001396 1.6e-10 69.3 47 78.7
Gohir.D06G047000 Gossypium hirsutum HOM05D000702 ORTHO05D001396 1.6e-10 69.3 48 75.0
Gorai.010G052500 Gossypium raimondii HOM05D000702 ORTHO05D001396 1.6e-10 69.3 48 75.0
Medtr3g088440 Medicago truncatula HOM05D000702 ORTHO05D001396 1.6e-10 69.3 48 75.0
Psat5g085920 Pisum sativum HOM05D000702 ORTHO05D001396 1.6e-10 69.3 48 75.0
Potri.002G080400 Populus trichocarpa HOM05D000702 ORTHO05D001396 1.6e-10 69.3 48 75.0
Actinidia21300 Actinidia chinensis HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
arahy.Tifrunner.gnm1.ann1.KT6FMN Arachis hypogaea HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
arahy.Tifrunner.gnm1.ann1.XMF1GC Arachis hypogaea HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
MSTRG.1423 Avicennia marina HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 77.1
MELO3C010638.2 Cucumis melo HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 75.0
Dinv27280 Davidia involucrata HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
FvH4_2g27530 Fragaria vesca HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
FAN15G2252 Fragaria x ananassa HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
FAN24G2995 Fragaria x ananassa HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
Nitab4.5_0000111g0130 Nicotiana tabacum HOM05D000702 ORTHO05D001396 2.1e-10 68.9 46 82.6
Nitab4.5_0005499g0010 Nicotiana tabacum HOM05D000702 ORTHO05D001396 2.1e-10 68.9 46 82.6
Potri.005G181000 Populus trichocarpa HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
Potri.005G181100 Populus trichocarpa HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
PGR042G0155 Punica granatum HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
Sabra05G0136900 Salix brachista HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
Solyc11g018530.2 Solanum lycopersicum HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
Sopen11g009480 Solanum pennellii HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
PGSC0003DMG400009247 Solanum tuberosum HOM05D000702 ORTHO05D001396 2.1e-10 68.9 48 79.2
CSS0046206 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 2.7e-10 68.6 48 75.0
CiPaw.15G033900 Carya illinoinensis HOM05D000702 ORTHO05D001396 2.7e-10 68.6 48 72.9
Ciclev10000736m.g Citrus clementina HOM05D000702 ORTHO05D001396 2.7e-10 68.6 48 77.1
Dinv14649 Davidia involucrata HOM05D000702 ORTHO05D001396 2.7e-10 68.6 48 77.1
ECA246G1119 Erigeron canadensis HOM05D000702 ORTHO05D001396 2.7e-10 68.6 48 77.1
Eucgr.F04337 Eucalyptus grandis HOM05D000702 ORTHO05D001396 2.7e-10 68.6 46 80.4
Lsat_1_v5_gn_6_97580 Lactuca sativa HOM05D000702 ORTHO05D001396 2.7e-10 68.6 48 77.1
TPR.G13470 Trifolium pratense HOM05D000702 ORTHO05D001396 2.7e-10 68.6 50 74.0
Gohir.D05G239300 Gossypium hirsutum HOM05D000702 ORTHO05D001396 3.5e-10 68.2 48 75.0
HanXRQChr05g0149121 Helianthus annuus HOM05D000702 ORTHO05D001396 3.5e-10 68.2 48 75.0
HanXRQChr05g0149131 Helianthus annuus HOM05D000702 ORTHO05D001396 3.5e-10 68.2 48 75.0
Lj1g0009373 Lotus japonicus HOM05D000702 ORTHO05D001396 3.5e-10 68.2 48 75.0
Aqoxy6G00266 Aquilegia oxysepala HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 77.1
Cfa018562 Carpinus fangiana HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 77.1
Duzib041G0663 Durio zibethinus HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 75.0
Duzib041G0780 Durio zibethinus HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 75.0
Lalb_Chr08g0241251 Lupinus albus HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 75.0
Medtr3g088460 Medicago truncatula HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 75.0
Os07g0257200 Oryza sativa ssp. japonica HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 79.2
RcHm_v2.0_Chr6g0296361 Rosa chinensis HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 77.1
Sabra05G0137000 Salix brachista HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 77.1
HPP92_002008 Vanilla planifolia HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 77.1
GSVIVG01008829001 Vitis vinifera HOM05D000702 ORTHO05D001396 4.6e-10 67.8 48 72.9
Eucgr.F04336 Eucalyptus grandis HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 75.0
HanXRQChr05g0149111 Helianthus annuus HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 75.0
Hma1.2p1_0542F.1_g174960 Hydrangea macrophylla HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 77.1
PSO063G5692 Papaver somniferum HOM05D000702 ORTHO05D001396 6.0e-10 67.4 47 78.7
Potri.005G180900 Populus trichocarpa HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 75.0
QL09p033246 Quercus lobata HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 77.1
QL09p033285 Quercus lobata HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 77.1
QL09p033354 Quercus lobata HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 77.1
QL09p033470 Quercus lobata HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 77.1
QL09p033501 Quercus lobata HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 77.1
QL09p033526 Quercus lobata HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 77.1
Thecc.08G129800 Theobroma cacao HOM05D000702 ORTHO05D001396 6.0e-10 67.4 48 72.9
Haze_17518 Corylus avellana HOM05D000702 ORTHO05D001396 7.8e-10 67.0 48 77.1
DCAR_014378 Daucus carota HOM05D000702 ORTHO05D001396 7.8e-10 67.0 46 80.4
Lj4A644G6 Lonicera japonica HOM05D000702 ORTHO05D001396 7.8e-10 67.0 48 75.0
Lj7C345G10 Lonicera japonica HOM05D000702 ORTHO05D001396 7.8e-10 67.0 48 77.1
PSO170G2653 Papaver somniferum HOM05D000702 ORTHO05D001396 7.8e-10 67.0 48 72.9
THA.LOC104806827 Tarenaya hassleriana HOM05D000702 ORTHO05D001396 7.8e-10 67.0 48 72.9
Cpa.g.sc64.128 Carica papaya HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 70.8
CiPaw.16G025400 Carya illinoinensis HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 75.0
Ca_16580_v3 Cicer arietinum L. HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 75.0
Cc10_g12370 Coffea canephora HOM05D000702 ORTHO05D001396 1.0e-09 66.6 56 66.1
Lsat_1_v5_gn_6_97121 Lactuca sativa HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 75.0
Lj1g0018073 Lotus japonicus HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 75.0
MD00G1030300 Malus domestica HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 75.0
Os07g0258400 Oryza sativa ssp. japonica HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 77.1
Phvul.009G127900 Phaseolus vulgaris HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 75.0
VMungo1309G0181 Vigna mungo HOM05D000702 ORTHO05D001396 1.0e-09 66.6 48 75.0
CSS0010095 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 72.9
CSS0019007 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 72.9
Ca_16593_v3 Cicer arietinum L. HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 72.9
DCAR_016670 Daucus carota HOM05D000702 ORTHO05D001396 1.3e-09 66.2 47 74.5
Gorai.013G042900 Gossypium raimondii HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 72.9
Lj1g0005349 Lotus japonicus HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 75.0
MD00G1042000 Malus domestica HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 72.9
Prupe.1G492500 Prunus persica HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 72.9
QL09p033620 Quercus lobata HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 72.9
vmacro00669 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 1.3e-09 66.2 48 77.1
Nn5g28413 Nelumbo nucifera HOM05D000702 ORTHO05D001396 1.7e-09 65.9 48 72.9
EL10Ac5g11934 Beta vulgaris HOM05D000702 ORTHO05D001396 2.3e-09 65.5 48 75.0
Glyma.06G115800 Glycine max HOM05D000702 ORTHO05D001396 2.3e-09 65.5 48 72.9
MD14G1158400 Malus domestica HOM05D000702 ORTHO05D001396 2.3e-09 65.5 48 75.0
PSO478G4966 Papaver somniferum HOM05D000702 ORTHO05D001396 2.3e-09 65.5 48 72.9
Peaxi162Scf00310g00044 Petunia axillaris HOM05D000702 ORTHO05D001396 2.3e-09 65.5 46 76.1
PGR044G0266 Punica granatum HOM05D000702 ORTHO05D001396 2.3e-09 65.5 48 70.8
Cpa.g.sc64.129 Carica papaya HOM05D000702 ORTHO05D001396 3.0e-09 65.1 48 72.9
Cc10_g12400 Coffea canephora HOM05D000702 ORTHO05D001396 3.0e-09 65.1 48 72.9
MBI06_g35529_MAGBIO Magnolia biondii HOM05D000702 ORTHO05D001396 3.0e-09 65.1 47 78.7
AUR62027327 Chenopodium quinoa HOM05D000702 ORTHO05D001396 3.9e-09 64.7 48 72.9
Atru.chr13.1534 Acer truncatum HOM05D000702 ORTHO05D001396 5.1e-09 64.3 47 72.3
Aqoxy6G00511 Aquilegia oxysepala HOM05D000702 ORTHO05D001396 5.1e-09 64.3 48 75.0
AUR62007406 Chenopodium quinoa HOM05D000702 ORTHO05D001396 5.1e-09 64.3 48 72.9
AUR62027326 Chenopodium quinoa HOM05D000702 ORTHO05D001396 5.1e-09 64.3 48 72.9
Lj4A640G28 Lonicera japonica HOM05D000702 ORTHO05D001396 6.6e-09 63.9 46 76.1
Rhsim09G0015700 Rhododendron simsii HOM05D000702 ORTHO05D001396 6.6e-09 63.9 48 72.9
vmacro00668 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 1.1e-08 63.2 48 70.8
Lsat_1_v5_gn_6_97101 Lactuca sativa HOM05D000702 ORTHO05D001396 1.5e-08 62.8 47 72.3
Lj4g0011359 Lotus japonicus HOM05D000702 ORTHO05D001396 1.5e-08 62.8 48 68.8
Sabra02G0062900 Salix brachista HOM05D000702 ORTHO05D001396 1.9e-08 62.4 46 73.9
Hund26792 Selenicereus undatus HOM05D000702 ORTHO05D001396 1.9e-08 62.4 48 72.9
Duzib041G0468 Durio zibethinus HOM05D000702 ORTHO05D001396 2.5e-08 62.0 48 66.7
vmacro18542 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 2.5e-08 62.0 48 66.7
ATR0994G015 Amborella trichopoda HOM05D000702 ORTHO05D001396 3.3e-08 61.6 48 68.8
Haze_03899 Corylus avellana HOM05D000702 ORTHO05D001396 3.3e-08 61.6 68 50.0
QL06p036226 Quercus lobata HOM05D000002 ORTHO05D000001 3.3e-08 61.6 49 63.3
GSVIVG01003954001 Vitis vinifera HOM05D000702 ORTHO05D001396 3.3e-08 61.6 48 64.6
Actinidia35736 Actinidia chinensis HOM05D000702 ORTHO05D001396 4.3e-08 61.2 48 64.6
Manes.06G034700 Manihot esculenta HOM05D000702 ORTHO05D001396 4.3e-08 61.2 42 78.6
Manes.16G060576 Manihot esculenta HOM05D000702 ORTHO05D001396 4.3e-08 61.2 42 78.6
unitig_52.g17219 Utricularia gibba HOM05D000702 ORTHO05D001396 4.3e-08 61.2 48 70.8
Zm00001eb231210 Zea mays HOM05D000702 ORTHO05D001396 4.3e-08 61.2 67 52.2
Hma1.2p1_1765F.1_g301450 Hydrangea macrophylla HOM05D000702 ORTHO05D001396 5.6e-08 60.8 48 68.8
Os02g0131800 Oryza sativa ssp. japonica HOM05D000702 ORTHO05D001396 5.6e-08 60.8 48 66.7
Lsat_1_v5_gn_3_51220 Lactuca sativa HOM05D000702 ORTHO05D001396 7.3e-08 60.5 47 70.2
Rhsim09G0015500 Rhododendron simsii HOM05D000702 ORTHO05D001396 7.3e-08 60.5 48 68.8
Zm00001eb097120 Zea mays HOM05D000702 ORTHO05D001396 7.3e-08 60.5 46 73.9
Manes.17G035595 Manihot esculenta HOM05D000702 ORTHO05D001396 2.8e-07 58.5 42 76.2
Cfa006864 Carpinus fangiana HOM05D000702 ORTHO05D001396 3.6e-07 58.2 48 60.4
Cc00_g16360 Coffea canephora HOM05D000702 ORTHO05D001396 1.1e-06 56.6 48 58.3
SEGI_26931 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 1.1e-06 56.6 47 66.0
Nn5g30784 Nelumbo nucifera HOM05D000702 ORTHO05D001396 1.4e-06 56.2 48 60.4
Rhsim09G0015600 Rhododendron simsii HOM05D000702 ORTHO05D001396 1.4e-06 56.2 46 69.6
Gohir.A11G282926 Gossypium hirsutum HOM05D000702 ORTHO05D001396 2.4e-06 55.5 48 64.6
Oeu002137.1 Olea europaea HOM05D000702 ORTHO05D001396 2.4e-06 55.5 48 58.3
SEGI_25687 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 5.2e-06 54.3 47 61.7
CiPaw.08G142400 Carya illinoinensis HOM05D000702 ORTHO05D001396 6.9e-06 53.9 48 56.2
COL.COLO4_26683 Corchorus olitorius HOM05D000702 ORTHO05D001396 6.9e-06 53.9 66 47.0
Thecc.06G040700 Theobroma cacao HOM05D000702 ORTHO05D001396 6.9e-06 53.9 66 47.0
AL1G28120 Arabidopsis lyrata HOM05D000702 ORTHO05D001396 9.0e-06 53.5 52 57.7


User provided reference genes

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