Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 8.5e-303 1043.1 623 100.0
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.4e-126 456.1 597 52.6
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.9e-125 452.6 597 53.4
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 2.7e-115 420.2 565 54.0
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.5e-97 361.3 571 47.1
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.4e-95 354.0 634 44.0
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 5.0e-93 346.3 628 45.5
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.9e-92 344.4 581 46.0
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 3.2e-92 343.6 620 43.7
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 8.7e-90 335.5 585 45.6
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.2e-86 325.1 582 43.1
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 6.5e-85 319.3 632 45.6
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.9e-84 317.8 625 44.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 3.2e-84 317.0 591 44.8
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.6e-83 314.7 595 43.9
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 3.6e-83 313.5 557 42.5
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 5.1e-82 309.7 586 39.1
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.6e-81 307.4 614 43.3
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.6e-81 307.4 578 45.2
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 3.7e-80 303.5 570 44.0
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 3.1e-79 300.4 632 42.9
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 3.1e-79 300.4 577 43.5
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.3e-79 299.7 556 44.8
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 6.9e-79 299.3 612 41.7
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.5e-78 298.1 595 38.7
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 4.5e-78 296.6 585 45.6
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.9e-78 296.2 587 45.3
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 5.9e-78 296.2 628 44.6
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 7.7e-78 295.8 554 41.3
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 1.0e-77 295.4 558 40.3
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 7.2e-76 289.3 577 41.2
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.0e-74 285.4 585 44.6
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 3.0e-74 283.9 570 41.6
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 3.9e-74 283.5 599 43.9
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 3.9e-74 283.5 595 41.2
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 5.2e-74 283.1 588 43.9
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 7.4e-73 279.3 629 39.1
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 7.4e-73 279.3 581 42.9
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.2e-72 277.7 628 37.6
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 8.2e-72 275.8 594 39.1
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.4e-71 275.0 594 40.2
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 3.1e-71 273.9 586 36.7
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 4.5e-70 270.0 590 35.9
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 5.9e-70 269.6 589 39.6
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.7e-69 268.1 563 42.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 3.8e-69 266.9 592 35.6
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.1e-68 265.4 605 39.7
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.5e-68 265.0 563 41.7
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.9e-68 264.6 587 36.8
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.6e-67 260.4 574 39.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.4e-66 258.5 559 42.0
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 4.0e-66 256.9 561 38.0
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.7e-66 256.1 571 40.1
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.3e-64 251.9 546 40.5
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.8e-64 250.8 368 51.4
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.8e-64 250.8 563 36.1
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 5.3e-63 246.5 520 41.3
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 9.1e-63 245.7 517 36.9
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.6e-62 245.0 574 37.3
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.0e-61 242.3 548 41.2
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.0e-61 242.3 574 36.9
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.2e-61 241.1 514 43.2
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 5.0e-61 240.0 569 35.3
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 8.5e-61 239.2 570 34.0
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 8.5e-61 239.2 576 38.2
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.5e-60 238.4 381 46.7
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 4.7e-59 233.4 456 41.4
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 6.1e-59 233.0 552 34.8
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 6.1e-59 233.0 588 36.6
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.0e-58 230.3 575 37.4
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 7.5e-57 226.1 577 37.3
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.3e-56 225.3 560 34.1
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 2.8e-56 224.2 586 34.6
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.8e-56 223.4 577 37.3
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 6.3e-56 223.0 267 53.6
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 1.1e-55 222.2 568 37.7
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.1e-55 222.2 575 35.1
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 1.8e-55 221.5 350 43.4
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.5e-54 216.9 563 39.1
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.0e-53 215.7 556 36.3
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.7e-53 214.9 433 40.9
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 4.2e-52 210.3 580 32.9
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 4.2e-52 210.3 392 49.0
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 7.2e-52 209.5 567 38.1
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 9.5e-52 209.1 589 32.1
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.0e-50 204.1 586 31.7
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 5.7e-49 199.9 548 32.7
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 7.5e-49 199.5 559 36.9
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 9.8e-49 199.1 558 32.4
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.2e-48 198.0 554 39.0
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.2e-48 198.0 555 36.0
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.1e-47 195.7 555 31.7
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 4.1e-47 193.7 558 32.6
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 7.0e-47 193.0 596 31.0
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 7.0e-47 193.0 614 30.1
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 9.2e-47 192.6 331 48.9
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.5e-46 190.7 526 37.6
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 7.8e-46 189.5 619 30.5
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.0e-45 189.1 558 32.3
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 5.0e-45 186.8 563 30.2
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 5.0e-45 186.8 530 34.0
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 3.3e-44 184.1 535 31.8
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 4.3e-44 183.7 548 31.0
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.3e-44 183.7 561 31.7
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 1.4e-42 178.7 594 30.3
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 5.2e-42 176.8 590 30.0
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 5.7e-41 173.3 560 30.2
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.9e-40 170.2 399 36.8
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 6.4e-40 169.9 580 36.7
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 2.0e-38 164.9 340 37.1
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.7e-32 144.1 128 62.5
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-28 132.5 124 57.3
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.3e-28 130.6 343 44.3
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.2e-27 129.0 129 58.9
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.7e-27 127.1 102 63.7
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 7.5e-25 119.8 283 33.2
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 8.6e-21 106.3 378 30.4
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.1e-20 105.9 108 50.0
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 5.2e-18 97.1 110 47.3
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.2e-17 95.9 354 30.5
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 7.6e-17 93.2 301 33.2
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.9e-17 92.8 349 27.8
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.9e-16 91.3 102 46.1
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.9e-15 88.6 293 29.4
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 2.1e-14 85.1 68 61.8
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.0e-13 82.8 71 57.7
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.3e-13 81.6 388 32.7
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.5e-12 79.0 69 53.6
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 3.3e-12 77.8 409 29.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 7.3e-12 76.6 365 26.6
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.7e-11 73.9 67 50.7
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.9e-08 63.9 60 50.0
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 6.4e-08 63.5 382 35.1
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 7.1e-07 60.1 67 55.2
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 1.6e-06 58.9 112 38.4
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.7e-06 58.2 370 33.2
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 4.6e-06 57.4 101 38.6
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 7.8e-06 56.6 44 52.3


User provided reference genes

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