Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 1.9e-164 582.4 290 100.0
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 3.6e-86 322.4 180 92.2
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.5e-81 305.4 185 84.9
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.2e-80 303.1 185 84.3
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 2.9e-80 302.8 181 89.5
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.5e-79 299.7 164 92.1
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.8e-77 293.5 166 87.3
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.2e-76 290.8 163 87.1
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 3.3e-76 289.3 166 86.7
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.7e-75 287.0 163 88.3
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 3.7e-75 285.8 163 87.7
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 4.8e-75 285.4 162 88.9
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 6.3e-75 285.0 165 86.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.4e-74 283.9 165 86.1
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.8e-74 283.5 165 86.7
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.4e-74 283.1 196 76.0
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 4.1e-74 282.3 161 85.7
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.1e-74 282.3 167 84.4
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.1e-74 282.3 167 84.4
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.3e-74 282.0 167 84.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 5.3e-74 282.0 173 82.7
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 5.3e-74 282.0 164 85.4
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 5.3e-74 282.0 177 80.2
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 7.0e-74 281.6 164 86.0
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.2e-73 280.8 185 76.8
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-73 280.8 167 84.4
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-73 280.8 167 84.4
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.2e-73 280.8 167 84.4
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.2e-73 280.8 170 83.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 1.6e-73 280.4 164 85.4
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 3.5e-73 279.3 164 84.1
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.5e-73 278.9 164 84.8
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 5.9e-73 278.5 173 79.2
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 7.7e-73 278.1 164 84.8
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 7.7e-73 278.1 164 84.1
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 7.7e-73 278.1 176 79.5
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.7e-73 278.1 164 84.1
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 7.7e-73 278.1 164 84.8
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.0e-72 277.7 162 85.8
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.7e-72 276.9 160 86.2
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.2e-72 276.6 164 84.8
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.9e-72 276.2 177 79.7
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 3.8e-72 275.8 159 85.5
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 3.8e-72 275.8 164 82.9
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 6.5e-72 275.0 158 88.0
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 6.5e-72 275.0 193 75.1
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.1e-71 274.2 163 84.0
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.1e-71 274.2 163 84.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.9e-71 273.5 164 81.7
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 2.5e-71 273.1 163 83.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.5e-71 273.1 160 84.4
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.2e-71 272.7 163 83.4
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 5.5e-71 271.9 164 81.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 5.5e-71 271.9 164 84.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 5.5e-71 271.9 164 81.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 9.4e-71 271.2 173 78.6
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.2e-70 270.8 158 84.8
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.6e-70 270.4 164 81.1
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.6e-70 270.4 166 78.9
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 2.1e-70 270.0 168 80.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.7e-70 269.6 164 80.5
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 2.7e-70 269.6 158 86.1
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 3.6e-70 269.2 168 81.5
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 3.6e-70 269.2 158 84.8
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 4.7e-70 268.9 161 81.4
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 6.1e-70 268.5 161 81.4
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 8.0e-70 268.1 165 80.0
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 8.0e-70 268.1 164 79.9
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 8.0e-70 268.1 160 81.2
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 8.0e-70 268.1 160 81.2
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 8.0e-70 268.1 160 81.2
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 8.0e-70 268.1 196 70.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 8.0e-70 268.1 173 78.6
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.0e-69 267.7 161 80.7
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 1.8e-69 266.9 160 81.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.3e-69 266.5 164 79.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 5.2e-69 265.4 160 81.2
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 5.2e-69 265.4 160 81.2
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 5.2e-69 265.4 160 81.2
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 5.2e-69 265.4 170 77.6
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.5e-68 263.8 160 80.6
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.6e-68 263.1 162 80.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 7.5e-68 261.5 146 89.0
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.3e-67 260.8 158 81.6
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.7e-67 259.2 168 75.0
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 8.3e-67 258.1 171 75.4
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 8.3e-67 258.1 177 75.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.1e-66 257.7 153 83.0
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.1e-66 256.1 162 76.5
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.1e-66 256.1 162 76.5
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 9.1e-66 254.6 171 74.3
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.2e-65 254.2 222 63.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.2e-65 254.2 160 76.9
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.2e-65 254.2 162 76.5
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.6e-65 253.8 162 76.5
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.6e-65 253.8 152 83.6
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 2.0e-65 253.4 181 72.4
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.7e-65 253.1 159 76.7
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.7e-65 253.1 162 76.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 3.5e-65 252.7 139 89.2
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.9e-65 251.9 160 76.9
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.3e-64 250.8 166 80.1
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.7e-64 250.4 197 68.5
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 2.2e-64 250.0 181 72.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.9e-64 249.6 205 64.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 5.0e-64 248.8 160 75.6
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 8.5e-64 248.1 154 81.2
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 8.5e-64 248.1 167 73.7
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.1e-63 247.7 150 79.3
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.9e-63 246.9 163 75.5
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.5e-63 246.5 163 74.8
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.5e-63 246.5 163 74.8
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 7.2e-63 245.0 148 81.1
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.6e-62 243.8 154 79.2
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.6e-62 243.8 157 76.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.0e-61 241.1 171 70.8
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.2e-60 237.7 186 67.7
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.5e-60 237.3 166 71.7
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.6e-60 236.5 179 68.7
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.4e-60 236.1 158 70.3
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 5.7e-60 235.3 127 91.3
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 6.3e-59 231.9 158 70.9
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.4e-58 229.9 155 72.9
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.4e-58 229.9 139 82.7
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.1e-58 229.6 156 73.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 4.1e-58 229.2 139 79.1
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.2e-57 227.6 157 66.2
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.6e-57 227.3 169 65.7
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.3e-56 224.2 133 85.0
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.9e-55 220.3 132 81.8
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 3.3e-55 219.5 127 82.7
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 2.9e-51 206.5 132 78.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.6e-48 195.3 134 70.1
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.1e-47 194.5 141 63.1
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.3e-47 192.6 132 75.0
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 5.6e-47 192.2 124 78.2
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.6e-46 190.7 124 79.0
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 4.7e-46 189.1 119 80.7
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.8e-45 187.2 198 55.6
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.1e-45 186.4 117 79.5
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.0e-44 183.7 145 58.6
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.7e-43 179.5 106 83.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-40 171.0 147 65.3
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 3.9e-40 169.5 97 81.4
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 6.6e-40 168.7 97 84.5
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.8e-38 163.3 181 55.8
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.1e-38 161.8 147 63.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-37 161.4 175 46.9
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-37 161.0 113 71.7
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.7e-32 144.1 90 78.9
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-32 143.3 86 86.0
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.9e-32 142.9 139 49.6
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 3.9e-32 142.9 77 90.9
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.5e-31 140.2 74 90.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 5.6e-31 139.0 77 88.3
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-24 117.1 80 72.5
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 6.6e-24 115.5 94 62.8
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.6e-22 110.9 72 80.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.1e-21 108.2 92 59.8
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 5.2e-21 105.9 88 61.4
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 6.0e-17 92.4 65 76.9
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.0e-16 91.7 70 64.3
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 2.3e-16 90.5 47 89.4
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.3e-14 84.7 157 41.4
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-13 81.6 52 75.0
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 6.9e-13 79.0 42 88.1
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 9.0e-13 78.6 42 85.7
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.8e-11 73.2 37 91.9
vmacro21001 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 4.9e-11 72.8 55 70.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.2e-10 70.1 146 30.1
vmacro00267 Vaccinium macrocarpon HOM05D068234 ORTHO05D018096 6.0e-09 65.9 50 58.0
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 5.1e-08 62.8 69 56.5
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 8.7e-08 62.0 32 93.8
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 5.6e-07 59.3 32 87.5
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 1.3e-06 58.2 109 32.1
vmacro21511 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 2.1e-06 57.4 145 25.5
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 3.7e-06 56.6 52 55.8
vmacro08878 Vaccinium macrocarpon HOM05D068234 ORTHO05D018096 3.7e-06 56.6 94 36.2
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 8.1e-06 55.5 91 35.2


User provided reference genes

Program Settings