Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00658 Vaccinium macrocarpon HOM05D015585 ORTHO05D000385 3.4e-216 755.0 455 100.0
vmacro12659 Vaccinium macrocarpon HOM05D015585 ORTHO05D000385 3.8e-50 203.4 462 39.0
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-46 191.8 386 45.6
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 1.5e-46 191.4 378 46.8
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 3.1e-44 183.7 378 45.8
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.8e-37 160.6 643 27.4
vmacro23035 Vaccinium macrocarpon HOM05D015585 ORTHO05D000385 4.7e-32 143.3 476 37.8
vmacro00652 Vaccinium macrocarpon HOM05D001309 ORTHO05D000385 2.8e-29 134.0 365 31.8
Rhsim11G0013700 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.2e-26 124.4 562 27.9
vmacro00660 Vaccinium macrocarpon HOM05D015585 ORTHO05D000385 6.1e-24 116.3 101 58.4
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.0e-23 115.5 93 61.3
Rhsim11G0004700 Rhododendron simsii HOM05D015585 ORTHO05D000385 3.0e-23 114.0 74 68.9
vmacro00665 Vaccinium macrocarpon HOM05D015585 ORTHO05D000385 1.7e-21 108.2 463 35.6
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 1.2e-14 85.5 78 50.0
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 2.0e-14 84.7 78 50.0
CSS0041327 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.7e-10 71.6 77 46.8
CSS0000891 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0001231 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0003542 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0004182 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-10 70.9 166 30.1
CSS0027060 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0028601 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0033025 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0033950 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0041437 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.9e-10 70.9 77 46.8
CSS0022677 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.8e-10 70.5 77 46.8
CSS0012868 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.0e-10 70.1 77 46.8
CSS0044969 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 8.5e-10 69.3 77 45.5
CSS0045334 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.5e-09 68.6 123 35.0
FAN04G2636 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.9e-09 68.2 76 46.1
FAN25G0106 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.9e-09 68.2 76 46.1
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 2.5e-09 67.8 91 41.8
CSS0010423 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.2e-09 67.4 74 45.9
CSS0016088 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.2e-09 67.4 74 45.9
CSS0019574 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.2e-09 67.0 77 44.2
CSS0030618 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.2e-09 67.0 73 46.6
Cc00_g05340 Coffea canephora HOM05D005012 ORTHO05D005886 7.2e-09 66.2 74 47.3
Lj9A299T35 Lonicera japonica HOM05D001309 ORTHO05D000385 7.2e-09 66.2 96 36.5
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 9.4e-09 65.9 81 40.7
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 9.4e-09 65.9 183 28.4
Atru.chr3.1415 Acer truncatum HOM05D005012 ORTHO05D005886 1.2e-08 65.5 91 37.4
CSS0007280 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.2e-08 65.5 73 45.2
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.2e-08 65.5 75 45.3
CSS0035704 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-08 65.1 73 45.2
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 2.7e-08 64.3 164 26.2
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 3.6e-08 63.9 78 43.6
CSS0040728 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 6.1e-08 63.2 73 43.8
Atru.chr1.3691 Acer truncatum HOM05D005012 ORTHO05D005886 8.0e-08 62.8 88 37.5
vmacro07151 Vaccinium macrocarpon HOM05D014212 ORTHO05D000385 8.0e-08 62.8 91 38.5
PGSC0003DMG400015737 Solanum tuberosum HOM05D001309 ORTHO05D000385 1.0e-07 62.4 85 44.7
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 2.3e-07 61.2 82 37.8
CSS0038015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.3e-07 61.2 76 42.1
RcHm_v2.0_Chr6g0306081 Rosa chinensis HOM05D005012 ORTHO05D005886 4.0e-07 60.5 104 37.5
RcHm_v2.0_Chr1g0322131 Rosa chinensis HOM05D005012 ORTHO05D005886 5.2e-07 60.1 104 37.5
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 6.8e-07 59.7 78 39.7
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 8.8e-07 59.3 97 37.1
Rhsim01G0164300 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.8e-07 59.3 144 31.9
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.2e-06 58.9 83 38.6
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.2e-06 58.9 83 38.6
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.2e-06 58.9 83 38.6
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 1.5e-06 58.5 84 39.3
FvH4_3g22860 Fragaria vesca HOM05D005012 ORTHO05D005886 1.5e-06 58.5 73 39.7
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-06 58.5 88 37.5
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 1.5e-06 58.5 84 38.1
RcHm_v2.0_Chr7g0222641 Rosa chinensis HOM05D005012 ORTHO05D005886 1.5e-06 58.5 99 35.4
Nn3g21442 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.0e-06 58.2 115 34.8
RcHm_v2.0_Chr1g0341871 Rosa chinensis HOM05D005012 ORTHO05D005886 2.0e-06 58.2 92 38.0
RcHm_v2.0_Chr7g0230481 Rosa chinensis HOM05D005012 ORTHO05D005886 2.0e-06 58.2 89 38.2
Zm00001eb235160 Zea mays HOM05D002305 ORTHO05D000385 2.0e-06 58.2 99 38.4
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 2.6e-06 57.8 81 38.3
Zm00001eb420260 Zea mays HOM05D002305 ORTHO05D000385 2.6e-06 57.8 92 39.1
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 3.4e-06 57.4 81 38.3
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 3.4e-06 57.4 81 38.3
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 3.4e-06 57.4 75 40.0
FvH4_1g28181 Fragaria vesca HOM05D005012 ORTHO05D005886 4.4e-06 57.0 75 41.3
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.4e-06 57.0 88 38.6
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 5.7e-06 56.6 133 27.1
Zm00001eb133410 Zea mays HOM05D002305 ORTHO05D002528 5.7e-06 56.6 78 41.0
Zm00001eb218570 Zea mays HOM05D008576 ORTHO05D000385 5.7e-06 56.6 78 41.0
Zm00001eb239860 Zea mays HOM05D008576 ORTHO05D000385 5.7e-06 56.6 78 41.0
Zm00001eb315670 Zea mays HOM05D008576 ORTHO05D000385 5.7e-06 56.6 78 41.0
Zm00001eb354780 Zea mays HOM05D008576 ORTHO05D000385 5.7e-06 56.6 78 41.0
Zm00001eb425380 Zea mays HOM05D008576 ORTHO05D000385 5.7e-06 56.6 163 28.8
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 7.5e-06 56.2 181 30.4


User provided reference genes

Program Settings