Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 2.4e-84 315.5 161 100.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.4e-49 197.6 114 86.8
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 9.3e-44 180.6 114 80.7
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 9.3e-44 180.6 114 80.7
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.1e-41 173.7 114 78.9
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.1e-41 173.7 114 78.9
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.3e-41 171.8 114 72.8
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 9.6e-41 170.6 109 77.1
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 9.6e-41 170.6 118 71.2
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 9.6e-41 170.6 111 78.4
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.3e-40 170.2 109 78.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.3e-40 170.2 109 78.0
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.6e-40 169.9 109 76.1
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.1e-40 169.5 109 75.2
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 4.8e-40 168.3 109 75.2
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 6.2e-40 167.9 108 76.9
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.2e-40 167.5 114 75.4
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 8.2e-40 167.5 113 71.7
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.4e-39 166.8 110 75.5
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.4e-39 166.8 114 75.4
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.8e-39 166.4 115 73.9
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.8e-39 166.4 114 74.6
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.8e-39 166.4 106 75.5
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 5.3e-39 164.9 115 73.0
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.3e-39 164.9 113 71.7
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 6.9e-39 164.5 114 71.1
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 6.9e-39 164.5 117 70.1
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 9.0e-39 164.1 116 74.1
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.2e-38 163.7 106 75.5
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.5e-38 163.3 109 74.3
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.5e-38 163.3 118 68.6
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.6e-38 162.5 103 80.6
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.6e-38 162.5 114 68.4
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.4e-38 162.2 109 72.5
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 3.4e-38 162.2 109 71.6
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 4.5e-38 161.8 114 68.4
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.5e-38 161.8 111 74.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 5.8e-38 161.4 121 70.2
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 7.6e-38 161.0 110 76.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 7.6e-38 161.0 110 76.4
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 7.6e-38 161.0 110 76.4
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.0e-37 160.6 114 67.5
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.3e-37 160.2 112 73.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.3e-37 160.2 108 72.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.3e-37 160.2 118 70.3
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.2e-37 159.5 113 73.5
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.2e-37 159.5 101 75.2
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.8e-37 158.7 102 75.5
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.8e-37 158.7 109 74.3
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 4.9e-37 158.3 102 75.5
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.4e-37 157.5 114 68.4
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.4e-37 157.5 114 68.4
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.4e-37 157.5 114 68.4
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 8.4e-37 157.5 110 72.7
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.1e-36 157.1 102 74.5
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.1e-36 157.1 109 73.4
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-36 157.1 104 75.0
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.1e-36 157.1 104 75.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.9e-36 156.4 102 74.5
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 2.5e-36 156.0 114 67.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.5e-36 156.0 114 67.5
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.5e-36 156.0 111 72.1
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 3.2e-36 155.6 102 73.5
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.2e-36 155.2 107 72.9
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.5e-36 154.8 108 65.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 9.3e-36 154.1 108 68.5
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 9.3e-36 154.1 106 67.9
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.6e-35 153.3 111 69.4
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.0e-34 150.6 108 70.4
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-34 150.6 108 70.4
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.0e-34 150.6 108 70.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.0e-34 150.6 108 70.4
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.3e-34 150.2 116 70.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.8e-34 149.8 108 71.3
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 2.3e-34 149.4 111 71.2
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.3e-34 149.4 111 69.4
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.3e-34 149.4 105 69.5
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.3e-34 149.4 111 68.5
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.9e-34 148.7 116 69.8
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 3.9e-34 148.7 112 66.1
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.1e-34 148.3 121 63.6
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 5.1e-34 148.3 119 62.2
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 6.7e-34 147.9 112 67.0
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 6.7e-34 147.9 112 67.0
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 6.7e-34 147.9 112 66.1
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.1e-33 147.1 107 69.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-33 147.1 121 63.6
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-33 146.7 121 62.8
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.9e-33 146.4 104 71.2
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.3e-33 145.6 119 61.3
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.3e-32 143.7 121 62.8
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.6e-32 143.3 112 63.4
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 2.2e-32 142.9 115 63.5
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 8.2e-32 141.0 112 64.3
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.8e-31 139.8 108 67.6
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.4e-31 139.4 121 61.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 3.1e-31 139.0 144 56.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 5.3e-31 138.3 131 58.0
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 5.3e-31 138.3 103 68.9
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.9e-31 137.9 102 69.6
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-30 137.1 131 58.0
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.5e-30 136.7 108 63.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.6e-30 136.0 119 59.7
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.6e-30 136.0 95 74.7
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.4e-30 135.6 109 65.1
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 4.5e-30 135.2 144 55.6
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 4.5e-30 135.2 116 59.5
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.7e-29 133.3 106 66.0
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.9e-28 129.8 103 59.2
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 3.2e-28 129.0 90 68.9
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 3.2e-28 129.0 89 70.8
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 5.5e-28 128.3 81 77.8
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 2.7e-27 125.9 103 64.1
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.7e-27 125.9 104 68.3
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 4.6e-27 125.2 80 75.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 7.9e-27 124.4 102 60.8
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 2.3e-26 122.9 126 57.1
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.9e-26 122.1 109 59.6
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.9e-26 122.1 103 61.2
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.1e-25 120.6 116 58.6
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.1e-25 120.6 103 65.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.5e-25 119.4 107 60.7
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.7e-24 115.5 103 61.2
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.7e-24 115.5 103 61.2
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.7e-24 115.5 103 59.2
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.4e-23 113.6 104 60.6
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 4.1e-23 112.1 131 53.4
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 5.3e-23 111.7 105 60.0
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.9e-23 111.3 104 59.6
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.4e-22 109.0 102 55.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 3.4e-22 109.0 129 51.2
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 3.4e-22 109.0 113 54.9
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 7.7e-22 107.8 104 58.7
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 7.7e-22 107.8 104 58.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 2.2e-21 106.3 112 55.4
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.9e-21 105.9 113 53.1
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 5.0e-21 105.1 107 56.1
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 5.0e-21 105.1 110 54.5
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.2e-20 101.3 100 55.0
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.4e-18 97.1 65 75.4
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.9e-18 95.5 91 59.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.1e-17 94.0 56 82.1
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.5e-17 93.6 105 46.7
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.3e-16 90.5 108 48.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.8e-16 89.4 108 49.1
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 3.7e-16 89.0 72 66.7
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.8e-15 86.7 108 50.0
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.3e-15 85.1 54 79.6
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.3e-15 85.1 72 61.1
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.0e-14 83.2 109 45.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 3.8e-13 79.0 49 77.6
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 8.5e-13 77.8 52 69.2
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.2e-12 75.9 65 61.5
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 5.5e-12 75.1 64 56.2
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 7.2e-12 74.7 107 43.9
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 4.7e-11 72.0 62 64.5
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 4.7e-11 72.0 67 52.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.2e-10 68.6 65 55.4
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 8.8e-10 67.8 116 34.5
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.3e-08 63.9 72 51.4
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-06 56.2 45 55.6
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 5.9e-06 55.1 64 43.8


User provided reference genes

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