Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 2.4e-104 382.1 187 100.0
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 7.2e-56 221.1 177 67.8
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.2e-49 199.5 178 61.2
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.3e-44 183.7 173 58.4
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 9.5e-40 167.5 179 54.2
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.7e-28 130.2 164 44.5
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 1.2e-26 124.0 178 43.3
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 3.3e-24 115.9 164 43.3
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 8.9e-22 107.8 163 40.5
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 3.4e-21 105.9 169 40.8
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 4.4e-21 105.5 163 38.7
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 2.9e-20 102.8 163 39.9
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 4.9e-20 102.1 111 47.7
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 4.9e-20 102.1 185 36.8
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 3.2e-19 99.4 185 37.8
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 4.1e-19 99.0 189 36.5
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.2e-18 97.4 164 39.6
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.7e-17 93.6 126 42.9
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 1.7e-17 93.6 165 38.8
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 3.0e-17 92.8 167 39.5
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 5.1e-17 92.0 172 37.8
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 5.1e-17 92.0 180 37.2
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 5.1e-17 92.0 171 39.2
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 3.3e-16 89.4 170 36.5
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 4.3e-16 89.0 180 34.4
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.6e-16 88.6 161 36.0
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 7.3e-16 88.2 158 43.0
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 9.5e-16 87.8 191 35.1
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.2e-15 87.4 172 35.5
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 1.2e-15 87.4 154 41.6
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 2.8e-15 86.3 122 41.0
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 1.4e-14 84.0 118 41.5
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.8e-14 83.6 187 36.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 1.8e-14 83.6 169 35.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.3e-14 83.2 187 36.9
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 3.1e-14 82.8 181 37.6
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 4.0e-14 82.4 168 35.7
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 5.2e-14 82.0 168 35.7
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 6.8e-14 81.6 184 35.3
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.2e-13 80.9 187 36.4
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 2.0e-13 80.1 122 38.5
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 4.4e-13 79.0 152 36.8
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 7.6e-13 78.2 172 31.4
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 3.7e-12 75.9 155 36.1
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.7e-12 75.9 171 32.7
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 4.9e-12 75.5 113 41.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 8.4e-12 74.7 115 39.1
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 8.4e-12 74.7 149 35.6
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 1.1e-11 74.3 160 33.1
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.4e-11 73.9 179 35.8
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.9e-11 73.6 119 42.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.4e-11 73.2 173 31.2
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.2e-11 72.8 169 33.1
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 4.1e-11 72.4 178 33.7
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 7.1e-11 71.6 71 47.9
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 9.2e-11 71.2 186 30.6
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 9.2e-11 71.2 126 38.1
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.2e-11 71.2 152 33.6
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 6.0e-10 68.6 154 35.7
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.0e-09 67.8 146 30.8
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.3e-09 66.6 143 36.4
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 3.9e-09 65.9 120 37.5
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 6.6e-09 65.1 80 42.5
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.1e-08 64.3 75 44.0
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 1.9e-08 63.5 167 32.3
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 2.5e-08 63.2 74 44.6
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 2.5e-08 63.2 177 33.3
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 5.6e-08 62.0 142 35.2
DCAR_005511 Daucus carota HOM05D004311 ORTHO05D005145 5.6e-08 62.0 101 40.6
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.6e-08 62.0 159 27.0
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 1.6e-07 60.5 139 32.4
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 3.6e-07 59.3 210 28.1
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.1e-06 57.8 58 51.7
Lsat_1_v5_gn_8_86701 Lactuca sativa HOM05D034205 ORTHO05D035130 1.4e-06 57.4 52 48.1
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 2.4e-06 56.6 146 26.0
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 3.1e-06 56.2 141 31.2
ECA236G2470 Erigeron canadensis HOM05D034205 ORTHO05D035130 5.2e-06 55.5 48 54.2
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 8.9e-06 54.7 165 27.3


User provided reference genes

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