Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.0e-196 689.9 349 100.0
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.5e-152 543.1 340 83.5
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 4.1e-113 412.1 338 67.8
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 4.3e-110 402.1 317 69.7
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 3.5e-104 382.5 302 67.9
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.7e-95 353.6 312 61.5
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 2.5e-94 349.7 344 57.8
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 6.8e-92 341.7 367 52.3
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 2.6e-91 339.7 348 54.6
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 5.4e-89 332.0 325 57.5
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 9.2e-89 331.3 307 58.3
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 1.2e-88 330.9 334 55.1
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.2e-88 330.9 304 57.9
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.5e-88 329.3 347 55.9
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.3e-87 327.4 318 56.9
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.3e-87 327.4 323 57.6
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.0e-87 326.2 323 57.6
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.1e-86 324.3 313 57.2
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.5e-86 323.9 335 54.6
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 2.5e-86 323.2 335 55.8
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 4.3e-86 322.4 342 52.6
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 5.6e-86 322.0 323 57.9
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 5.6e-86 322.0 342 55.0
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.1e-85 320.1 350 54.6
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 2.8e-85 319.7 286 59.1
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.1e-84 317.8 341 53.7
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 2.4e-84 316.6 326 53.7
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 4.0e-84 315.8 315 55.2
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 6.9e-84 315.1 319 54.5
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.2e-83 314.3 329 54.4
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.0e-83 313.5 327 55.4
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.6e-83 313.2 295 59.0
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 3.4e-83 312.8 315 57.5
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 9.9e-83 311.2 343 53.1
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.7e-82 310.5 335 52.8
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 3.8e-82 309.3 316 55.7
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.8e-82 309.3 295 58.0
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 4.9e-82 308.9 301 57.8
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 6.4e-82 308.5 341 52.2
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.4e-81 307.4 316 55.4
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 4.2e-81 305.8 414 44.2
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 5.4e-81 305.4 338 51.8
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 1.2e-80 304.3 330 53.0
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 3.5e-80 302.8 309 55.3
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 5.1e-79 298.9 329 53.2
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.1e-79 298.9 311 54.0
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.1e-79 298.9 311 54.0
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 5.1e-79 298.9 311 54.0
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 5.1e-79 298.9 309 52.8
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 8.7e-79 298.1 300 56.0
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.1e-78 297.7 334 52.4
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 9.6e-78 294.7 315 54.3
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 9.6e-78 294.7 309 53.7
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 9.6e-78 294.7 324 51.5
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.3e-77 294.3 288 57.3
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.3e-77 294.3 320 54.4
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 1.8e-76 290.4 300 55.7
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 9.0e-76 288.1 336 48.8
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 9.0e-76 288.1 329 48.9
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 2.0e-75 287.0 312 51.0
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 2.2e-74 283.5 323 52.9
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 2.2e-74 283.5 304 52.0
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 4.9e-74 282.3 286 53.8
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 6.4e-74 282.0 286 55.9
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.4e-73 280.8 306 51.0
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.4e-73 280.8 327 51.4
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 5.4e-73 278.9 320 50.3
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 5.4e-73 278.9 331 48.6
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 9.3e-73 278.1 329 49.8
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 2.1e-72 276.9 312 50.6
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 3.5e-72 276.2 286 51.7
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.8e-71 273.9 267 59.6
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.1e-70 271.2 344 47.1
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.9e-70 270.4 286 51.4
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 3.3e-70 269.6 289 52.6
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 2.8e-69 266.5 341 46.6
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 7.6e-67 258.5 276 53.3
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.7e-66 257.3 311 46.9
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.1e-65 254.6 302 47.4
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 2.1e-64 250.4 255 56.1
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 4.6e-64 249.2 288 49.0
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 5.1e-63 245.7 280 50.0
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.6e-61 240.7 287 51.9
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 2.8e-61 240.0 287 48.8
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 3.7e-61 239.6 281 49.1
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 8.2e-61 238.4 281 48.4
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.8e-60 237.3 287 47.7
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 6.9e-60 235.3 287 47.0
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 7.6e-59 231.9 292 45.5
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 7.6e-59 231.9 322 42.5
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.7e-58 230.7 259 52.5
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 3.8e-58 229.6 278 48.2
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 2.5e-57 226.9 292 43.2
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 2.5e-57 226.9 292 43.2
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 7.1e-57 225.3 283 45.6
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.2e-56 224.6 289 46.4
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 2.1e-56 223.8 281 47.0
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 2.7e-56 223.4 310 42.6
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 2.7e-56 223.4 284 45.8
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 5.1e-55 219.2 289 45.7
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 1.5e-54 217.6 294 44.6
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 3.3e-54 216.5 224 58.0
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 5.7e-54 215.7 285 44.6
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.6e-53 214.2 333 42.0
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 5.0e-50 202.6 304 42.8
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 4.6e-48 196.1 307 43.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 6.9e-44 182.2 187 50.8
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 2.0e-43 180.6 369 34.7
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 7.7e-43 178.7 279 41.2
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.4e-41 174.5 276 40.6
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 7.9e-40 168.7 106 71.7
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.8e-39 167.5 354 34.5
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 1.4e-36 157.9 413 32.4
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.4e-35 153.3 279 36.9
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 3.2e-33 146.7 182 48.9
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 4.2e-33 146.4 213 41.8
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-30 138.3 311 33.1
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.5e-30 137.9 311 33.1
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.4e-30 136.3 105 67.6
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 8.5e-26 122.1 112 55.4
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 7.5e-22 109.0 80 62.5
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 6.5e-18 95.9 88 52.3
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.5e-14 84.7 265 29.1
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.5e-14 84.7 81 53.1
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.1e-12 75.5 56 64.3
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.1e-09 68.6 52 57.7
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 1.1e-09 68.6 102 43.1
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 1.2e-08 65.1 70 47.1
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 4.7e-08 63.2 250 29.2
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 4.7e-08 63.2 62 48.4
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.3e-07 60.8 48 62.5


User provided reference genes

Program Settings