Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00566 Vaccinium macrocarpon HOM05D000373 ORTHO05D427081 1.7e-60 235.7 113 100.0
Rhsim09G0036900 Rhododendron simsii HOM05D000373 ORTHO05D007048 5.2e-09 64.7 37 91.9
Actinidia32944 Actinidia chinensis HOM05D000373 ORTHO05D007048 6.8e-09 64.3 40 85.0
Dinv22660 Davidia involucrata HOM05D000373 ORTHO05D007048 1.2e-08 63.5 40 85.0
CANSAT78G1153 Cannabis sativa HOM05D000373 ORTHO05D007048 2.0e-08 62.8 37 86.5
Gohir.A03G096300 Gossypium hirsutum HOM05D000373 ORTHO05D007048 2.0e-08 62.8 37 89.2
Gohir.D02G111900 Gossypium hirsutum HOM05D000373 ORTHO05D007048 2.0e-08 62.8 37 89.2
Gohir.D02G112201 Gossypium hirsutum HOM05D000373 ORTHO05D007048 2.0e-08 62.8 37 89.2
CSS0019893 Camellia sinensis var. sinensis HOM05D000373 ORTHO05D007048 2.6e-08 62.4 78 53.8
FvH4_4g11880 Fragaria vesca HOM05D000373 ORTHO05D007048 4.4e-08 61.6 37 86.5
FAN07G1233 Fragaria x ananassa HOM05D000373 ORTHO05D007048 4.4e-08 61.6 37 86.5
FAN12G2414 Fragaria x ananassa HOM05D000373 ORTHO05D007048 4.4e-08 61.6 37 86.5
FAN12G3595 Fragaria x ananassa HOM05D000373 ORTHO05D007048 4.4e-08 61.6 37 86.5
Prupe.1G180100 Prunus persica HOM05D000373 ORTHO05D007048 4.4e-08 61.6 37 86.5
RcHm_v2.0_Chr4g0409351 Rosa chinensis HOM05D000373 ORTHO05D007048 4.4e-08 61.6 37 86.5
MD04G1030700 Malus domestica HOM05D000373 ORTHO05D007048 5.8e-08 61.2 74 58.1
Atru.chr3.1694 Acer truncatum HOM05D000373 ORTHO05D007048 7.5e-08 60.8 39 79.5
CSS0037323 Camellia sinensis var. sinensis HOM05D000373 ORTHO05D007048 7.5e-08 60.8 78 52.6
TWI38G2105 Tripterygium wilfordii HOM05D000373 ORTHO05D007048 9.9e-08 60.5 40 80.0
FAN17G2746 Fragaria x ananassa HOM05D000373 ORTHO05D007048 2.2e-07 59.3 37 81.1
Gorai.005G128400 Gossypium raimondii HOM05D000373 ORTHO05D007048 2.2e-07 59.3 37 86.5
Sc07g0007110 Simmondsia chinensis HOM05D000373 ORTHO05D007048 3.7e-07 58.5 37 81.1
Lalb_Chr21g0307721 Lupinus albus HOM05D000373 ORTHO05D007048 6.4e-07 57.8 71 53.5
Eucgr.E02366 Eucalyptus grandis HOM05D000373 ORTHO05D007048 8.3e-07 57.4 37 81.1
Ciclev10021508m.g Citrus clementina HOM05D000373 ORTHO05D007048 1.1e-06 57.0 37 78.4
Duzib151G0775 Durio zibethinus HOM05D000373 ORTHO05D007048 1.1e-06 57.0 37 81.1
Thhalv10017046m.g Eutrema salsugineum HOM05D000373 ORTHO05D007048 1.1e-06 57.0 37 81.1
Glyma.10G297300 Glycine max HOM05D000373 ORTHO05D007048 1.1e-06 57.0 37 83.8
Lsat_1_v5_gn_3_110980 Lactuca sativa HOM05D000373 ORTHO05D007048 1.1e-06 57.0 68 54.4
Thecc.04G180900 Theobroma cacao HOM05D000373 ORTHO05D007048 1.1e-06 57.0 37 81.1
BcaC02g12416 Brassica carinata HOM05D000373 ORTHO05D007048 1.4e-06 56.6 36 83.3
BcaNung03537 Brassica carinata HOM05D000373 ORTHO05D007048 1.4e-06 56.6 36 83.3
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.4e-06 56.6 36 83.3
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.4e-06 56.6 36 83.3
BolC4t22053H Brassica oleracea HOM05D000373 ORTHO05D007048 1.4e-06 56.6 36 83.3
BraA05t19343Z Brassica rapa HOM05D000373 ORTHO05D007048 1.4e-06 56.6 36 83.3
ClCG07G016670 Citrullus lanatus HOM05D000373 ORTHO05D007048 1.4e-06 56.6 45 68.9
Gohir.A10G136200 Gossypium hirsutum HOM05D000373 ORTHO05D007048 1.4e-06 56.6 37 81.1
Gohir.D10G130400 Gossypium hirsutum HOM05D000373 ORTHO05D007048 1.4e-06 56.6 37 81.1
Gorai.011G144200 Gossypium raimondii HOM05D000373 ORTHO05D007048 1.4e-06 56.6 37 81.1
arahy.Tifrunner.gnm1.ann1.2QEA81 Arachis hypogaea HOM05D000373 ORTHO05D007048 1.9e-06 56.2 37 75.7
arahy.Tifrunner.gnm1.ann1.DES9ZX Arachis hypogaea HOM05D000373 ORTHO05D007048 1.9e-06 56.2 37 75.7
Sp4g25210 Schrenkiella parvula HOM05D000373 ORTHO05D007048 1.9e-06 56.2 37 81.1
Sed0006717 Sechium edule HOM05D000373 ORTHO05D007048 1.9e-06 56.2 42 71.4
Carub.0004s2556 Capsella rubella HOM05D000373 ORTHO05D007048 2.4e-06 55.8 37 78.4
CiPaw.02G058500 Carya illinoinensis HOM05D000373 ORTHO05D007048 2.4e-06 55.8 66 53.0
COL.COLO4_07296 Corchorus olitorius HOM05D000373 ORTHO05D007048 2.4e-06 55.8 37 78.4
Manes.04G054200 Manihot esculenta HOM05D000373 ORTHO05D007048 2.4e-06 55.8 37 78.4
AT2G43080 Arabidopsis thaliana HOM05D000373 ORTHO05D007048 3.2e-06 55.5 37 75.7
BNapus_Darmor_BZH_scaffold_64p00070 Brassica napus HOM05D000373 ORTHO05D007048 3.2e-06 55.5 36 80.6
BraA04t18709Z Brassica rapa HOM05D000373 ORTHO05D007048 3.2e-06 55.5 36 80.6
CsaV3_4G003800 Cucumis sativus L. HOM05D000373 ORTHO05D007048 3.2e-06 55.5 46 65.2
BcaC02g07207 Brassica carinata HOM05D000373 ORTHO05D007048 4.1e-06 55.1 36 77.8
C04p70080 Brassica napus HOM05D000373 ORTHO05D007048 4.1e-06 55.1 36 77.8
BolC4t28508H Brassica oleracea HOM05D000373 ORTHO05D007048 4.1e-06 55.1 36 77.8
Cfa008556 Carpinus fangiana HOM05D000373 ORTHO05D007048 4.1e-06 55.1 36 80.6
Haze_11069 Corylus avellana HOM05D000373 ORTHO05D007048 4.1e-06 55.1 36 80.6
Glyma.20G248500 Glycine max HOM05D000373 ORTHO05D007048 4.1e-06 55.1 37 81.1
Psat0s4086g0040 Pisum sativum HOM05D000373 ORTHO05D007048 4.1e-06 55.1 37 75.7
Lalb_Chr06g0164631 Lupinus albus HOM05D000373 ORTHO05D007048 5.4e-06 54.7 71 50.7
Phvul.007G002000 Phaseolus vulgaris HOM05D000373 ORTHO05D007048 5.4e-06 54.7 37 78.4
VMungo0720G1216 Vigna mungo HOM05D000373 ORTHO05D007048 5.4e-06 54.7 37 78.4
Ah.02g115380 Amaranthus hybridus HOM05D000373 ORTHO05D007048 7.1e-06 54.3 36 77.8
TPR.G8910 Trifolium pratense HOM05D000373 ORTHO05D007048 7.1e-06 54.3 36 80.6
Aa31LG1G24850 Aethionema arabicum HOM05D000373 ORTHO05D007048 9.2e-06 53.9 37 73.0


User provided reference genes

Program Settings