Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 0.0e+00 1083.2 567 100.0
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 4.0e-158 562.4 420 72.9
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 2.9e-156 556.2 417 72.7
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.7e-156 555.8 420 71.9
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 3.7e-156 555.8 439 70.4
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 3.2e-155 552.7 420 71.2
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 4.1e-155 552.4 418 71.3
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 7.1e-155 551.6 418 71.3
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.2e-154 550.8 419 71.1
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.7e-154 549.7 418 71.5
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 7.8e-154 548.1 419 70.6
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 3.0e-153 546.2 418 70.8
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 8.6e-153 544.7 420 70.0
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 8.6e-153 544.7 419 70.4
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.5e-152 543.9 421 70.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.5e-152 543.9 420 69.8
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.5e-152 543.9 419 69.7
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 3.3e-152 542.7 420 69.8
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.3e-152 542.7 417 70.5
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.3e-152 542.7 420 69.3
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 5.6e-152 542.0 418 69.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.2e-151 540.8 420 69.3
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.6e-151 540.4 418 69.9
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.8e-151 539.7 419 69.5
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 6.2e-151 538.5 421 69.1
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 8.1e-151 538.1 420 69.0
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 8.1e-151 538.1 417 69.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.1e-150 537.7 420 69.0
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.4e-150 537.3 418 69.4
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.4e-150 537.3 420 68.6
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.4e-150 537.3 421 69.4
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.4e-150 537.3 421 69.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.4e-150 537.3 420 69.0
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 1.8e-150 537.0 417 69.8
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.1e-150 536.2 418 69.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 5.2e-150 535.4 418 69.1
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 5.2e-150 535.4 418 69.1
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.2e-150 535.4 418 69.1
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 6.8e-150 535.0 417 69.5
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.2e-149 534.3 418 68.9
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.5e-149 533.9 421 68.2
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 3.4e-149 532.7 420 68.1
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 5.8e-149 531.9 418 68.9
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 5.8e-149 531.9 417 68.8
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.6e-149 531.6 420 68.1
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.6e-149 531.6 420 67.9
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.6e-149 531.6 421 67.7
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 7.6e-149 531.6 417 69.1
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 9.9e-149 531.2 420 67.9
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 9.9e-149 531.2 417 68.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 9.9e-149 531.2 420 67.9
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.3e-148 530.8 417 68.6
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.7e-148 530.4 418 68.4
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.7e-148 530.4 418 68.7
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 2.2e-148 530.0 417 68.6
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.9e-148 529.6 417 68.8
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.9e-148 529.6 420 67.9
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.9e-148 529.6 417 68.3
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.8e-148 529.3 403 71.5
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 1.4e-147 527.3 418 67.9
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 3.2e-147 526.2 418 67.7
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-146 524.2 420 66.9
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-146 524.2 420 66.9
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.2e-146 524.2 420 66.9
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.2e-146 524.2 420 67.4
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.2e-146 524.2 417 67.9
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.2e-146 524.2 422 67.3
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.6e-146 523.9 419 68.0
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 3.5e-146 522.7 422 67.1
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.5e-146 522.7 422 67.1
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 6.0e-146 521.9 420 66.9
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.0e-145 521.2 422 66.8
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.3e-145 520.8 418 67.7
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.3e-145 520.8 417 67.6
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.3e-145 520.8 420 66.4
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 3.0e-145 519.6 417 67.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.9e-145 519.2 420 66.2
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 6.6e-145 518.5 419 65.9
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 8.7e-145 518.1 423 66.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 8.7e-145 518.1 459 63.4
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 8.7e-145 518.1 420 66.2
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 3.3e-144 516.2 415 67.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 5.6e-144 515.4 417 66.7
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.3e-143 514.2 402 69.7
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.1e-142 509.6 420 64.8
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 2.6e-141 506.5 420 67.9
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 2.6e-141 506.5 401 68.3
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.6e-141 505.0 419 64.9
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 9.9e-141 504.6 394 68.8
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 8.4e-140 501.5 421 64.4
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.9e-139 500.4 401 68.1
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 1.9e-139 500.4 421 64.1
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.9e-139 500.4 401 67.1
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.9e-139 500.4 394 68.5
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 2.4e-139 500.0 421 64.1
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 5.4e-139 498.8 420 64.0
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 5.4e-139 498.8 420 64.0
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 7.1e-139 498.4 421 63.4
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 9.3e-139 498.0 423 63.4
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.2e-138 497.7 420 63.8
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.2e-138 497.7 420 63.8
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.2e-138 497.7 420 63.8
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.6e-138 497.3 421 63.9
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.6e-138 497.3 419 64.2
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 2.1e-138 496.9 422 63.3
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 2.7e-138 496.5 420 63.6
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 3.5e-138 496.1 421 63.7
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 3.5e-138 496.1 421 63.4
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.0e-137 494.6 421 63.2
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.0e-137 494.6 403 66.5
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 2.3e-137 493.4 421 63.2
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 3.9e-137 492.7 421 63.2
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.5e-136 490.7 401 65.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 3.3e-136 489.6 412 63.3
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 9.6e-136 488.0 436 61.5
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.6e-135 487.3 421 62.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 6.2e-135 485.3 448 62.1
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 6.2e-135 485.3 419 62.5
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 8.1e-135 485.0 418 64.8
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 4.0e-134 482.6 421 60.8
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 9.9e-133 478.0 417 60.2
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 6.4e-132 475.3 419 60.6
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.1e-131 474.6 420 64.0
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 7.9e-130 468.4 401 63.1
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.9e-128 463.8 419 59.2
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.6e-128 462.2 419 59.2
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 5.6e-128 462.2 280 85.4
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 6.9e-126 455.3 281 84.0
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 6.9e-126 455.3 281 84.0
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.1e-123 448.0 356 69.4
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 6.7e-121 438.7 447 56.6
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.5e-120 437.6 419 61.3
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 8.2e-119 431.8 420 59.0
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.0e-116 424.9 373 62.5
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 2.5e-115 420.2 400 56.2
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.7e-109 398.7 420 56.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 5.9e-101 372.5 429 51.5
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.0e-100 371.7 323 63.5
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 2.7e-98 363.6 336 59.5
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 6.7e-97 359.0 257 70.4
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.1e-96 358.2 400 48.2
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.4e-94 350.5 336 58.3
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 2.4e-86 323.9 301 60.5
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 2.7e-82 310.5 414 42.5
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 2.3e-81 307.4 415 44.8
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 8.6e-52 209.1 128 80.5
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.2e-42 178.7 168 57.7
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.5e-32 145.2 196 49.0
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 7.3e-27 126.3 80 77.5
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.2e-24 119.0 73 79.5
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.5e-21 107.5 95 62.1
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.5e-19 101.3 106 54.7
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 6.9e-17 93.2 143 42.7
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 4.2e-14 84.0 51 78.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 3.5e-13 80.9 99 47.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.1e-11 75.9 96 49.0
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.6e-10 72.0 42 76.2
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 8.1e-10 69.7 60 61.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 8.1e-10 69.7 60 61.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 3.2e-06 57.8 89 40.4


User provided reference genes

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