Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 9.7e-259 896.3 469 100.0
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 2.5e-206 722.2 490 80.0
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 7.6e-179 630.9 480 71.5
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.6e-174 614.8 489 69.1
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.6e-174 614.8 489 69.1
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 2.7e-168 595.9 482 68.0
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 3.0e-167 592.4 482 67.8
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 5.3e-164 581.6 508 64.6
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.3e-162 577.0 476 66.6
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 4.5e-155 552.0 479 64.1
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 7.1e-153 544.7 488 63.5
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 3.5e-152 542.3 480 63.3
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 4.6e-152 542.0 482 63.3
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 1.3e-151 540.4 477 62.7
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 6.7e-151 538.1 475 62.9
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 1.9e-150 536.6 499 62.3
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 1.3e-149 533.9 487 60.8
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 2.8e-149 532.7 484 60.7
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 3.7e-149 532.3 482 61.6
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.7e-149 532.3 476 62.6
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 6.3e-149 531.6 477 61.8
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 6.3e-149 531.6 496 60.9
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.1e-148 530.8 495 61.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.8e-148 530.0 480 62.1
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.4e-148 529.6 478 60.7
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 9.0e-148 527.7 480 61.7
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 9.0e-148 527.7 478 60.7
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.5e-147 526.9 487 62.0
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 7.7e-147 524.6 482 61.4
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 7.7e-147 524.6 477 60.2
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 1.7e-146 523.5 490 59.4
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.2e-146 523.1 485 59.8
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 2.2e-146 523.1 475 60.4
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 8.5e-146 521.2 478 61.3
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.2e-144 517.3 471 61.4
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 2.1e-144 516.5 481 60.9
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 2.7e-144 516.2 482 60.6
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 2.7e-144 516.2 476 59.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 1.4e-143 513.8 477 59.1
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.8e-143 513.5 473 59.8
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 5.1e-143 511.9 472 58.7
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 8.8e-143 511.1 494 57.5
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.1e-142 510.8 469 59.5
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 1.5e-142 510.4 476 59.9
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 3.3e-142 509.2 474 59.3
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 3.1e-140 502.7 480 60.2
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 4.1e-140 502.3 475 58.9
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 6.9e-140 501.5 471 59.2
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 9.1e-140 501.1 469 59.5
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.2e-139 500.7 471 59.7
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 2.6e-139 499.6 457 60.4
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.4e-139 499.2 486 60.3
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.4e-139 499.2 469 59.3
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 7.7e-139 498.0 494 57.1
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 1.0e-138 497.7 469 59.3
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.3e-138 497.3 497 56.5
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.2e-138 496.5 493 56.6
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.9e-138 496.1 498 59.4
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.4e-137 493.8 507 56.2
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.9e-137 493.4 516 56.0
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.9e-137 493.4 487 58.3
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 2.5e-137 493.0 428 65.4
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 2.5e-137 493.0 485 57.1
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 7.2e-137 491.5 471 59.0
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 9.4e-137 491.1 471 58.2
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 2.7e-136 489.6 485 56.7
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 3.9e-135 485.7 490 55.1
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 5.1e-135 485.3 472 57.2
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 1.5e-134 483.8 476 56.9
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 3.3e-134 482.6 493 56.0
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 3.3e-134 482.6 527 53.9
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 7.4e-134 481.5 475 57.9
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.3e-133 480.7 472 57.6
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 3.7e-133 479.2 472 56.4
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 8.2e-133 478.0 474 56.3
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 8.2e-133 478.0 474 56.3
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 1.1e-132 477.6 472 56.4
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.1e-132 475.7 474 58.0
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 7.0e-132 474.9 488 55.7
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.5e-131 473.8 471 56.9
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 2.0e-131 473.4 476 56.1
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 1.3e-130 470.7 472 59.3
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 5.0e-130 468.8 500 54.2
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.4e-129 467.2 481 57.0
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 2.5e-129 466.5 488 54.3
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 4.2e-129 465.7 469 55.9
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 4.7e-128 462.2 466 55.6
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 4.7e-128 462.2 470 54.9
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 5.7e-126 455.3 493 53.5
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 9.7e-126 454.5 469 54.6
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 2.2e-125 453.4 470 54.0
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.8e-124 450.3 405 63.0
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 2.4e-124 449.9 433 61.4
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 4.5e-123 445.7 472 53.2
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 3.6e-120 436.0 481 53.0
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.0e-119 434.5 517 51.3
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.2e-118 431.0 480 51.0
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.6e-115 420.6 410 60.5
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.5e-113 414.1 472 50.2
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.0e-111 407.9 400 59.0
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.8e-109 399.8 421 56.3
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 4.8e-109 399.1 476 50.8
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 5.0e-98 362.5 499 47.9
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 6.1e-96 355.5 410 52.0
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 3.4e-94 349.7 335 56.7
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.7e-93 347.4 312 62.5
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 2.5e-89 333.6 479 44.5
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 9.8e-86 321.6 387 49.1
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 4.1e-84 316.2 305 62.0
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.3e-82 311.2 483 43.3
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 9.9e-78 295.0 197 78.2
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.5e-73 281.2 311 53.7
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 4.0e-71 273.1 465 39.4
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 3.0e-66 256.9 227 62.6
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 6.2e-56 222.6 249 51.0
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 1.4e-55 221.5 441 35.8
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.8e-55 221.1 228 53.1
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.0e-54 217.6 229 54.6
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 4.3e-49 199.9 314 44.9
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 9.0e-47 192.2 232 47.8
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.5e-46 191.4 390 33.6
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 9.3e-36 155.6 153 51.0
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.3e-34 151.8 147 59.9
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.5e-33 148.3 111 72.1
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 3.2e-28 130.6 144 48.6
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 2.1e-27 127.9 179 48.0
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 5.7e-25 119.8 185 40.0
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.7e-21 108.2 94 56.4
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 2.5e-20 104.4 321 30.5
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.7e-16 91.7 74 66.2
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 2.8e-08 64.3 86 51.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.2e-06 58.9 114 35.1
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 1.6e-06 58.5 75 36.0
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.5e-06 57.0 175 29.1
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 4.5e-06 57.0 112 32.1
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 7.7e-06 56.2 121 32.2


User provided reference genes

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