Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.0e-138 495.7 252 100.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.4e-72 274.6 193 75.6
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.3e-71 273.9 207 72.0
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 2.0e-69 266.5 194 73.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.2e-67 259.2 193 70.5
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 3.2e-67 259.2 189 72.5
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 5.5e-67 258.5 193 72.0
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.2e-66 257.3 192 70.3
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.1e-65 251.9 193 69.4
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 6.7e-65 251.5 195 66.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 8.8e-65 251.1 207 63.8
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.5e-64 250.4 191 69.1
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 2.0e-64 250.0 193 69.4
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.6e-64 249.6 191 69.1
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.3e-64 249.2 192 66.7
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 7.4e-64 248.1 191 68.6
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.3e-63 247.3 193 65.8
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 2.2e-63 246.5 192 66.7
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 2.8e-63 246.1 193 68.4
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.8e-63 246.1 193 68.4
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.8e-63 246.1 193 68.4
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 2.8e-63 246.1 193 68.4
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 3.7e-63 245.7 194 68.0
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 6.3e-63 245.0 192 67.7
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 6.3e-63 245.0 190 68.4
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 8.2e-63 244.6 193 66.3
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 8.2e-63 244.6 193 67.4
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 8.2e-63 244.6 192 65.6
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.1e-62 244.2 193 65.3
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-62 244.2 193 67.9
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 1.4e-62 243.8 193 66.8
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.8e-62 243.4 192 66.7
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.8e-62 243.4 193 66.8
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.4e-62 243.0 193 68.4
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 3.1e-62 242.7 196 64.8
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.1e-62 242.7 191 67.0
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 4.1e-62 242.3 191 67.0
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 4.1e-62 242.3 191 67.0
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 7.0e-62 241.5 193 66.3
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 7.0e-62 241.5 193 66.3
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 7.0e-62 241.5 192 66.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.2e-61 240.7 192 67.2
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 1.5e-61 240.4 193 64.8
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.5e-61 240.4 193 64.2
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.5e-61 240.4 189 66.7
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.0e-61 240.0 193 64.2
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 2.0e-61 240.0 192 67.2
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 2.0e-61 240.0 192 67.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.5e-61 239.2 193 64.8
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 4.5e-61 238.8 193 64.8
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 5.9e-61 238.4 192 65.6
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.0e-60 237.7 192 67.7
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.3e-60 237.3 179 69.8
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.3e-60 237.3 195 64.6
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.7e-60 236.9 189 65.6
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-60 235.7 193 64.2
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-60 235.7 193 64.2
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-60 235.7 193 64.2
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-60 235.7 193 64.2
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 8.5e-60 234.6 193 64.2
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 8.5e-60 234.6 193 64.8
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 1.1e-59 234.2 194 63.9
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.9e-59 233.4 192 63.5
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.9e-59 233.4 193 63.7
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.9e-59 233.4 192 64.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.2e-59 232.6 195 63.6
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.5e-59 231.9 195 63.1
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.2e-58 230.7 193 63.2
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 2.3e-57 226.5 193 63.2
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 2.3e-57 226.5 190 63.2
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.9e-57 225.7 217 59.0
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 6.7e-57 224.9 193 63.2
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 8.8e-57 224.6 180 65.6
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.6e-56 223.0 188 62.8
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.8e-55 219.5 189 61.4
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 3.7e-55 219.2 192 56.8
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 4.8e-55 218.8 185 62.2
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 4.8e-55 218.8 127 85.8
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.1e-54 217.6 175 65.7
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.8e-54 216.9 194 60.8
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.3e-54 215.3 193 56.5
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 6.5e-52 208.4 164 67.1
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 8.5e-52 208.0 117 87.2
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.6e-50 203.8 163 62.6
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 8.0e-50 201.4 124 79.8
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.3e-49 199.9 192 58.9
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 5.2e-49 198.7 216 51.4
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.6e-48 196.4 189 54.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.4e-48 195.7 186 55.9
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 4.4e-48 195.7 166 61.4
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 9.7e-48 194.5 184 56.0
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 9.7e-48 194.5 117 82.1
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 4.8e-47 192.2 184 54.9
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.1e-46 191.0 191 54.5
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.4e-46 190.7 165 59.4
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 3.1e-46 189.5 176 53.4
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 3.1e-46 189.5 176 53.4
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 4.1e-46 189.1 176 52.8
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 4.1e-46 189.1 176 52.8
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 5.3e-46 188.7 184 54.9
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 5.3e-46 188.7 162 58.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.7e-45 186.4 183 54.1
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.7e-45 186.4 153 60.1
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.5e-45 185.7 154 61.7
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.7e-45 184.9 188 51.6
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 1.3e-44 184.1 112 77.7
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.3e-44 184.1 176 52.3
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.3e-44 184.1 172 60.5
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.2e-44 183.3 163 58.3
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.5e-44 181.8 188 50.5
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 8.5e-44 181.4 176 50.6
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.5e-43 179.9 153 63.4
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.5e-43 178.7 188 51.1
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 7.2e-43 178.3 119 76.5
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.1e-42 176.8 188 48.9
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 3.6e-42 176.0 186 50.0
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 1.8e-41 173.7 163 51.5
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.2e-40 171.0 186 47.3
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.6e-36 155.2 182 48.9
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.1e-35 154.5 164 54.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.5e-35 154.1 118 61.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.8e-34 149.8 95 78.9
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.0e-33 146.4 188 46.3
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 2.4e-30 136.7 193 42.5
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 2.0e-29 133.7 115 62.6
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 4.5e-29 132.5 193 38.9
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 4.5e-29 132.5 189 41.3
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 4.5e-29 132.5 112 58.0
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.2e-26 124.4 149 46.3
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.8e-26 123.2 154 50.0
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 2.3e-25 120.2 158 44.3
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 2.6e-24 116.7 84 70.2
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 4.9e-23 112.5 172 37.8
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.4e-22 110.9 102 57.8
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.2e-21 107.8 193 40.9
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.7e-21 106.7 71 70.4
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.9e-20 102.8 94 58.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 5.6e-19 99.0 99 56.6
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.8e-18 96.7 129 42.6
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.2e-16 91.3 75 65.3
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.5e-16 90.9 51 92.2
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 2.0e-16 90.5 55 70.9
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 3.4e-16 89.7 59 71.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 9.8e-16 88.2 75 65.3
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.7e-15 87.4 102 44.1
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 1.7e-15 87.4 102 44.1
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 1.7e-15 87.4 102 44.1
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-15 87.0 171 33.3
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 3.9e-12 76.3 54 70.4
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 5.1e-12 75.9 50 74.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 6.6e-12 75.5 49 73.5
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.1e-11 74.7 58 60.3
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 1.1e-11 74.7 193 31.6
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-08 63.5 46 69.6
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.8e-08 62.4 43 79.1


User provided reference genes

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