Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.6e-260 902.1 433 100.0
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.6e-226 788.5 433 87.8
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-221 772.7 409 89.7
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 8.5e-217 756.9 411 87.6
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 4.2e-216 754.6 412 87.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 5.5e-216 754.2 413 86.4
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.1e-213 746.5 405 86.9
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.0e-213 745.7 412 86.2
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.3e-213 744.6 409 87.0
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 9.7e-213 743.4 412 85.9
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.3e-212 743.0 413 84.0
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.7e-212 742.7 409 86.6
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 2.2e-212 742.3 413 86.2
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 2.8e-212 741.9 413 85.5
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.4e-211 739.6 411 85.6
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 2.4e-211 738.8 412 83.7
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.1e-211 738.0 413 84.0
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 6.9e-211 737.3 413 84.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 6.9e-211 737.3 425 82.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.5e-210 736.1 428 82.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.0e-210 735.7 409 85.3
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 4.5e-210 734.6 413 84.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.0e-209 733.4 408 85.0
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.2e-209 732.3 413 83.1
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.9e-209 731.9 408 84.1
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 6.5e-209 730.7 413 82.8
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-208 729.9 408 83.8
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-208 729.9 408 83.8
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.2e-208 728.4 405 85.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.2e-208 728.4 412 82.8
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 4.2e-208 728.0 411 83.0
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 5.5e-208 727.6 439 80.4
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 7.2e-208 727.2 412 82.3
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 7.2e-208 727.2 408 84.1
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 9.4e-208 726.9 413 83.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 2.7e-207 725.3 392 89.0
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.7e-207 724.5 413 81.8
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 6.1e-207 724.2 408 82.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 7.9e-207 723.8 413 82.3
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.0e-206 723.4 413 82.3
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.8e-206 722.6 408 83.3
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 3.0e-206 721.8 418 81.6
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 3.9e-206 721.5 412 81.6
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.9e-206 721.5 408 82.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 5.1e-206 721.1 414 82.6
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 6.7e-206 720.7 411 82.7
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.7e-206 720.7 413 82.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 8.8e-206 720.3 413 81.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.1e-205 719.9 408 83.1
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-205 719.9 408 82.8
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.3e-205 718.4 408 82.8
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 5.7e-205 717.6 404 82.4
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.3e-204 716.5 412 82.3
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.3e-204 716.5 404 82.4
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.7e-204 716.1 408 82.8
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 6.3e-204 714.1 412 81.8
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 8.2e-204 713.8 413 80.9
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.1e-203 713.4 400 83.8
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.4e-203 713.0 413 80.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.4e-203 713.0 412 81.3
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 4.1e-203 711.4 413 81.6
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 4.1e-203 711.4 413 81.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 4.1e-203 711.4 413 81.6
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 5.3e-203 711.1 406 81.3
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 7.0e-203 710.7 411 80.8
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 9.1e-203 710.3 406 82.3
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 9.1e-203 710.3 412 81.3
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.2e-202 709.9 412 81.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.6e-202 708.8 403 83.9
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.5e-202 708.4 414 82.1
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 4.5e-202 708.0 413 81.1
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 5.9e-202 707.6 408 82.4
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.0e-201 706.8 412 80.1
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.7e-201 706.1 406 81.3
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-201 706.1 424 79.7
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.9e-201 705.3 409 82.2
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.8e-201 704.9 409 80.4
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 5.0e-201 704.5 414 80.0
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.4e-200 703.0 411 79.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 9.4e-200 700.3 421 79.3
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 9.4e-200 700.3 446 75.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 2.7e-199 698.7 412 80.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.3e-198 695.7 410 79.3
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.1e-197 693.3 413 77.7
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.7e-196 689.5 414 78.3
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.8e-195 686.0 414 78.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.4e-195 685.6 411 77.9
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.6e-194 682.9 499 69.1
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.9e-194 681.0 411 77.1
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 6.1e-191 671.0 412 75.7
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 3.0e-190 668.7 408 77.7
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.7e-189 664.5 408 77.0
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.4e-187 659.1 408 76.7
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 3.4e-181 638.6 408 75.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.4e-181 638.3 402 75.1
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.2e-180 636.0 408 75.0
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.1e-179 633.6 340 88.2
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 5.9e-178 627.9 417 70.7
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.9e-177 625.5 403 73.9
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.8e-175 619.0 417 70.0
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.4e-173 611.7 410 71.0
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 9.2e-171 604.0 402 70.6
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 2.0e-170 602.8 413 68.3
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.9e-169 598.6 414 72.5
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.5e-168 594.0 387 73.6
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 9.5e-168 594.0 316 88.0
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 4.7e-167 591.7 403 68.0
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.2e-163 578.9 402 68.9
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.4e-163 578.2 429 63.9
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.7e-162 575.9 316 85.1
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 8.6e-161 570.9 420 65.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.2e-157 560.5 329 79.9
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.5e-157 560.1 422 63.5
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.1e-154 549.7 410 69.5
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.6e-154 548.5 434 60.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.3e-153 547.0 293 87.7
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.8e-150 536.6 332 77.7
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.2e-150 535.0 417 60.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.3e-148 530.4 400 62.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.7e-145 520.0 405 62.0
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.3e-144 515.4 353 70.0
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.8e-143 512.7 337 72.4
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.2e-131 472.2 407 57.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 6.0e-122 441.8 360 62.8
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.1e-118 431.0 409 51.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 9.6e-112 407.9 225 86.7
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 3.1e-110 402.9 236 80.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 4.1e-102 375.9 314 60.5
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-78 297.4 157 90.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.6e-77 294.3 188 72.3
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 7.7e-77 292.0 204 68.1
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.6e-74 283.1 176 75.0
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.4e-70 271.2 197 70.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.9e-61 239.2 230 58.7
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.5e-51 208.0 120 80.8
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.3e-51 205.7 113 84.1
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.0e-49 199.9 107 82.2
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.0e-44 183.0 107 80.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-38 164.1 88 86.4
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.3e-35 153.7 93 78.5
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 8.1e-34 149.1 204 41.7
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.4e-32 143.7 165 48.5
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.8e-32 142.9 82 84.1
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.0e-28 132.1 107 59.8
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.8e-26 124.0 78 76.9
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 7.1e-22 109.4 246 32.1
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.2e-21 108.6 67 68.7
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.1e-21 107.8 57 78.9
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 5.1e-20 103.2 63 77.8
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 9.6e-19 99.0 72 61.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.3e-15 88.6 121 43.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 36 91.7
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.6e-13 80.1 38 86.8
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-09 68.2 81 46.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 9.0e-09 65.9 69 53.6
MSTRG.22610 Avicennia marina HOM05D000617 ORTHO05D000478 2.2e-07 61.2 232 25.9
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 8.4e-07 59.3 170 29.4
SalBow6G0654 Salvia bowleyana HOM05D000617 ORTHO05D000478 9.3e-06 55.8 231 24.7


User provided reference genes

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