Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 3.3e-245 851.3 431 100.0
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 1.2e-165 587.0 437 75.1
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 8.0e-151 537.7 442 66.7
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 1.4e-150 537.0 432 69.0
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 3.1e-150 535.8 434 68.9
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 1.1e-147 527.3 447 67.6
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 7.0e-147 524.6 432 66.2
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 2.0e-146 523.1 430 67.9
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 2.1e-143 513.1 435 66.0
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 8.0e-143 511.1 442 65.4
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 2.3e-142 509.6 430 66.5
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 3.1e-142 509.2 444 65.3
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.2e-141 507.3 439 64.9
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 7.5e-141 504.6 432 66.2
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 2.9e-140 502.7 440 65.2
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 4.9e-140 501.9 437 65.0
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 4.9e-140 501.9 385 70.6
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 1.1e-139 500.7 436 64.7
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 3.2e-139 499.2 430 65.3
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 6.0e-138 495.0 425 64.5
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.0e-137 494.2 385 69.9
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 1.0e-137 494.2 384 69.8
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 1.3e-137 493.8 436 64.0
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 1.7e-137 493.4 433 64.7
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 2.3e-137 493.0 438 64.4
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 5.1e-137 491.9 439 64.0
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 8.6e-137 491.1 436 63.8
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 1.1e-136 490.7 429 64.1
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 1.5e-136 490.3 388 68.3
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 4.3e-136 488.8 434 64.1
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 5.6e-136 488.4 431 64.0
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.2e-135 487.3 389 68.9
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 4.7e-135 485.3 438 63.5
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 4.7e-135 485.3 446 61.7
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.1e-134 484.2 438 63.2
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.1e-134 484.2 436 63.8
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.8e-134 483.4 438 62.8
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 2.3e-134 483.0 397 65.7
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 4.0e-134 482.3 384 68.2
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 4.0e-134 482.3 384 68.2
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 6.8e-134 481.5 382 69.1
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 6.8e-134 481.5 442 63.6
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 8.9e-134 481.1 442 62.0
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.2e-133 480.7 442 61.8
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.0e-133 479.9 381 67.7
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 3.4e-133 479.2 399 66.7
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 4.4e-133 478.8 385 68.6
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 9.9e-133 477.6 434 62.2
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.3e-132 477.2 385 68.1
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 1.7e-132 476.9 417 65.0
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 4.9e-132 475.3 396 66.2
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 8.3e-132 474.6 453 61.1
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 1.1e-131 474.2 391 67.5
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.1e-131 474.2 434 61.8
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.1e-131 474.2 385 67.3
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.9e-131 473.4 413 64.2
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 4.1e-131 472.2 384 66.4
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 2.1e-130 469.9 435 62.8
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 6.0e-130 468.4 430 61.9
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.3e-129 467.2 381 66.7
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 2.3e-129 466.5 386 66.6
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 2.3e-129 466.5 389 66.3
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 6.6e-129 464.9 433 62.6
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 8.6e-129 464.5 390 65.6
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 8.6e-129 464.5 472 57.6
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 1.9e-128 463.4 381 65.9
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 7.3e-128 461.5 385 65.5
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.1e-126 457.6 441 59.0
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 5.2e-126 455.3 430 60.5
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 6.8e-126 454.9 385 64.7
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 6.8e-126 454.9 382 65.2
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 8.9e-126 454.5 387 65.6
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.5e-125 453.8 436 58.7
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 4.9e-124 448.7 391 61.6
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 8.4e-124 448.0 392 62.8
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 9.2e-123 444.5 366 63.7
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 3.0e-121 439.5 376 62.0
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 3.0e-121 439.5 393 62.6
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 8.7e-121 438.0 467 54.4
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.1e-120 437.6 380 62.1
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 1.1e-120 437.6 397 59.7
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.9e-120 436.8 344 65.4
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 2.1e-119 433.3 438 55.9
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 6.2e-119 431.8 386 60.1
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 6.2e-119 431.8 392 61.5
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 1.4e-118 430.6 439 56.3
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 3.1e-118 429.5 435 55.9
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 3.1e-118 429.5 435 55.9
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 4.0e-118 429.1 385 60.8
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 5.3e-118 428.7 428 56.3
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 6.9e-118 428.3 436 55.7
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.2e-117 427.6 384 60.2
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.2e-117 427.6 384 60.2
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 1.5e-117 427.2 435 55.6
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 5.8e-117 425.2 424 55.9
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 7.6e-117 424.9 434 54.8
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 9.9e-117 424.5 384 59.9
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 9.9e-117 424.5 433 56.1
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 9.9e-117 424.5 432 55.8
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 1.3e-116 424.1 369 60.7
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 1.7e-116 423.7 433 55.9
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.8e-116 422.5 341 63.3
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.8e-116 422.5 371 59.8
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 8.4e-116 421.4 364 60.2
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 9.3e-115 417.9 388 62.1
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.6e-114 417.2 341 62.2
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 2.7e-114 416.4 332 64.2
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 7.8e-114 414.8 335 63.6
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 7.8e-114 414.8 335 63.6
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 7.8e-114 414.8 335 63.6
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 7.8e-114 414.8 335 63.6
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.3e-113 414.1 377 58.4
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.3e-113 414.1 337 62.6
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.7e-113 413.7 345 61.4
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.7e-113 413.7 345 61.4
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 3.0e-113 412.9 332 63.9
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 5.1e-113 412.1 341 61.6
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 6.6e-113 411.8 337 62.0
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 6.6e-113 411.8 386 60.1
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 2.5e-112 409.8 376 59.3
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 1.1e-107 394.4 419 54.2
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 3.5e-106 389.4 382 59.2
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 8.4e-100 368.2 341 58.7
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 1.4e-99 367.5 322 63.7
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 1.6e-98 364.0 390 51.8
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 3.9e-97 359.4 364 56.6
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 7.4e-96 355.1 271 70.1
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 1.0e-89 334.7 357 57.1
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 6.7e-89 332.0 336 57.7
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 5.0e-84 315.8 249 69.1
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.0e-81 306.6 340 56.5
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 3.0e-81 306.6 362 44.8
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 6.7e-81 305.4 340 56.5
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 7.4e-80 302.0 305 60.3
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 8.2e-79 298.5 331 48.6
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 2.0e-77 293.9 332 53.6
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 3.4e-77 293.1 343 47.2
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 3.5e-69 266.5 305 54.4
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 5.7e-64 249.2 135 90.4
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 4.8e-63 246.1 135 89.6
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 8.2e-63 245.4 134 90.3
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.1e-62 245.0 135 89.6
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.1e-62 245.0 314 42.7
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.4e-54 218.0 251 51.0
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 4.5e-53 213.0 221 57.9
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 4.5e-45 186.4 102 88.2
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-44 184.5 114 79.8
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 8.6e-44 182.2 115 78.3
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 5.6e-35 152.9 88 87.5
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.8e-33 147.9 76 90.8
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 1.2e-32 145.2 214 39.3
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-32 145.2 76 88.2
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 3.4e-32 143.7 79 87.3
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 4.3e-27 126.7 62 90.3
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.1e-26 124.4 98 66.3
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 3.6e-26 123.6 114 47.4
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 4.0e-25 120.2 94 63.8
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 9.2e-22 109.0 100 52.0
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 1.7e-20 104.8 72 72.2
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 3.0e-20 104.0 57 91.2
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 6.6e-20 102.8 53 94.3
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 9.5e-19 99.0 57 89.5
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.5e-16 91.7 48 93.8
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 1.7e-15 88.2 136 38.2
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 7.1e-14 82.8 53 73.6
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 3.5e-13 80.5 55 72.7


User provided reference genes

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