Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.4e-124 447.2 225 100.0
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.5e-108 394.0 197 100.0
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 6.4e-83 311.2 268 63.8
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 4.3e-71 271.9 204 72.1
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 2.4e-69 266.2 206 68.9
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 5.8e-68 261.5 205 68.8
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 4.9e-67 258.5 206 67.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 7.8e-65 251.1 205 66.8
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.0e-64 249.2 204 65.7
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 2.4e-61 239.6 199 65.8
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 9.9e-60 234.2 201 61.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 6.4e-59 231.5 196 62.2
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 6.4e-59 231.5 207 61.4
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 8.4e-59 231.1 204 61.3
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 4.2e-58 228.8 199 64.3
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 5.4e-58 228.4 198 62.1
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 4.6e-57 225.3 196 63.8
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 7.9e-57 224.6 200 61.0
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.7e-56 223.4 203 62.6
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.0e-56 222.6 199 63.3
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.1e-56 221.9 200 63.5
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 5.1e-56 221.9 203 60.6
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 8.7e-56 221.1 201 58.7
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.1e-55 220.7 200 61.0
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.5e-55 219.5 217 57.6
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.3e-55 218.8 202 59.9
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.3e-55 218.8 205 58.5
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.6e-55 218.4 200 62.0
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 5.6e-55 218.4 195 59.5
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 9.6e-55 217.6 199 60.3
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.3e-54 217.2 198 58.6
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.6e-54 216.9 204 59.8
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.8e-54 216.1 200 62.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.6e-54 215.7 202 55.9
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 2.4e-53 213.0 197 58.9
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 5.3e-53 211.8 201 59.7
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 9.0e-53 211.1 216 56.5
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.0e-52 209.9 201 60.2
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 4.5e-52 208.8 197 56.3
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 9.9e-52 207.6 200 57.5
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.3e-51 207.2 200 57.5
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.3e-51 207.2 202 56.9
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.2e-51 206.5 201 59.2
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.9e-51 206.1 200 59.0
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.9e-51 206.1 200 59.0
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.9e-51 206.1 186 58.1
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.9e-51 205.3 201 57.7
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.9e-51 205.3 201 57.7
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 8.4e-51 204.5 202 56.4
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.9e-50 203.4 229 52.8
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.2e-50 202.6 201 55.2
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.2e-50 202.6 201 55.7
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.2e-50 202.6 202 56.9
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.2e-50 202.2 200 56.0
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.2e-50 202.2 201 56.7
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 4.2e-50 202.2 199 56.8
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 5.5e-50 201.8 201 57.7
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 7.1e-50 201.4 202 55.9
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 9.3e-50 201.1 200 60.5
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.2e-49 200.7 207 55.6
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.2e-49 200.7 198 58.6
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.6e-49 200.3 202 55.9
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.1e-49 199.9 205 55.1
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.1e-49 199.9 210 56.7
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.1e-49 199.9 201 54.7
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 2.7e-49 199.5 199 56.8
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 6.0e-49 198.4 216 54.2
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 7.9e-49 198.0 202 55.0
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 7.9e-49 198.0 201 58.2
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-48 197.6 201 56.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-48 197.6 201 56.2
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.0e-48 197.6 206 53.9
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.3e-48 197.2 201 56.7
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.3e-48 197.2 196 60.7
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.8e-48 196.8 205 55.1
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.3e-48 196.4 197 63.5
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.3e-48 196.4 202 56.4
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 5.1e-48 195.3 329 40.4
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 6.7e-48 194.9 207 55.6
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.1e-47 194.1 202 56.9
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.5e-47 193.7 263 48.3
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.9e-47 193.4 207 54.1
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 2.5e-47 193.0 202 57.4
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 4.3e-47 192.2 201 56.7
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 4.3e-47 192.2 201 56.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.6e-47 191.8 197 56.3
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.4e-47 191.4 202 54.5
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 7.4e-47 191.4 203 54.7
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 7.4e-47 191.4 200 56.0
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 9.6e-47 191.0 205 53.7
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 9.6e-47 191.0 201 56.7
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-46 190.3 204 55.4
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.1e-46 189.9 211 51.2
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 8.1e-46 188.0 202 54.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 8.1e-46 188.0 197 54.8
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 8.1e-46 188.0 199 53.3
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 8.1e-46 188.0 197 54.3
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-45 187.6 203 53.7
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.1e-45 187.6 203 54.2
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.8e-45 186.8 203 54.2
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.0e-44 183.3 202 50.5
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.8e-44 181.8 228 48.7
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 7.6e-44 181.4 200 55.0
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 7.6e-44 181.4 200 55.0
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.0e-43 181.0 207 53.6
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.3e-43 180.6 204 52.5
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 2.2e-43 179.9 200 55.0
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-43 179.9 196 54.1
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.9e-43 179.5 153 63.4
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 4.9e-43 178.7 203 51.2
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 4.9e-43 178.7 203 51.2
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.9e-43 178.7 204 52.5
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-42 176.8 197 50.8
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.2e-42 176.0 196 50.5
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.5e-42 175.3 196 54.1
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.5e-42 175.3 195 51.3
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 9.3e-42 174.5 199 50.8
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-41 174.1 203 49.3
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.2e-41 174.1 203 49.3
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.2e-41 174.1 203 49.3
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 6.0e-41 171.8 193 50.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.8e-40 170.2 206 51.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.0e-40 169.5 200 50.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 3.0e-40 169.5 201 50.2
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.9e-40 169.1 201 48.3
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 6.7e-40 168.3 202 48.0
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 8.7e-40 167.9 200 50.0
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 7.4e-39 164.9 202 48.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 3.7e-38 162.5 152 57.9
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.2e-38 161.4 200 48.5
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.0e-36 156.8 172 52.9
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 5.9e-36 155.2 197 48.2
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 2.2e-35 153.3 195 47.2
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 2.5e-34 149.8 199 47.2
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 4.2e-34 149.1 199 45.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.5e-34 148.7 199 47.2
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.7e-33 146.4 121 66.9
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.7e-33 146.4 201 46.8
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 3.5e-33 146.0 191 47.6
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.5e-33 146.0 188 47.9
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 6.7e-32 141.7 170 48.2
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 7.4e-31 138.3 141 54.6
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 4.8e-30 135.6 202 43.6
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 8.2e-30 134.8 122 62.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.1e-29 134.4 105 70.5
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.8e-29 133.7 172 48.8
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.1e-29 132.9 220 42.3
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 4.1e-29 132.5 154 53.2
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.0e-28 130.2 91 67.0
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.1e-26 124.4 154 45.5
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 2.5e-26 123.2 193 39.4
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.2e-26 122.9 128 52.3
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.2e-26 122.5 164 46.3
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.4e-24 117.5 126 52.4
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.8e-24 117.1 151 47.0
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.8e-24 117.1 166 44.0
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 5.3e-21 105.5 142 45.8
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 6.7e-16 88.6 195 36.9
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 8.8e-16 88.2 153 38.6
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.4e-15 85.1 91 59.3
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 3.1e-13 79.7 107 44.9
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 5.9e-12 75.5 88 50.0
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.0e-11 74.7 44 84.1
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.3e-11 74.3 54 64.8
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.2e-11 73.6 44 81.8
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.2e-11 73.6 44 81.8
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.8e-11 72.8 93 48.4
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 4.2e-10 69.3 125 40.0
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 3.6e-09 66.2 52 59.6
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.0e-08 64.7 102 43.1
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 6.7e-08 62.0 138 36.2
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 2.8e-06 56.6 104 40.4
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 2.8e-06 56.6 104 40.4
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 2.8e-06 56.6 104 40.4
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 2.8e-06 56.6 104 40.4


User provided reference genes

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