Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00284 Vaccinium macrocarpon HOM05D000317 ORTHO05D000032 8.7e-34 146.4 72 100.0
Rhsim11G0020700 Rhododendron simsii HOM05D000317 ORTHO05D000032 1.1e-25 119.4 71 83.1
CSS0001412 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 1.4e-23 112.5 72 81.9
CSS0047374 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 1.4e-23 112.5 72 83.3
CSS0021269 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 1.8e-23 112.1 71 83.1
GSVIVG01013085001 Vitis vinifera HOM05D000317 ORTHO05D000032 9.0e-23 109.8 71 78.9
Dinv25254 Davidia involucrata HOM05D000317 ORTHO05D000032 8.4e-21 103.2 71 74.6
Duzib084G1359 Durio zibethinus HOM05D000317 ORTHO05D000032 8.4e-21 103.2 74 68.9
Gohir.D08G174900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 3.2e-20 101.3 74 73.0
Gorai.004G182500 Gossypium raimondii HOM05D000317 ORTHO05D000032 3.2e-20 101.3 74 73.0
Thecc.03G309600 Theobroma cacao HOM05D000317 ORTHO05D000032 3.2e-20 101.3 73 72.6
Gohir.A08G153966 Gossypium hirsutum HOM05D000317 ORTHO05D000032 7.1e-20 100.1 74 71.6
Gohir.A08G154032 Gossypium hirsutum HOM05D000317 ORTHO05D000032 7.1e-20 100.1 74 71.6
Cc08_g03280 Coffea canephora HOM05D000317 ORTHO05D000032 9.3e-20 99.8 70 72.9
Duzib068G0674 Durio zibethinus HOM05D000317 ORTHO05D000032 2.1e-19 98.6 75 69.3
Duzib205G0608 Durio zibethinus HOM05D000317 ORTHO05D000032 3.5e-19 97.8 74 66.2
VMungo1215G1741 Vigna mungo HOM05D000317 ORTHO05D000032 3.5e-19 97.8 71 69.0
COL.COLO4_16948 Corchorus olitorius HOM05D000317 ORTHO05D000032 6.1e-19 97.1 73 69.9
Dinv28999 Davidia involucrata HOM05D000317 ORTHO05D000032 1.0e-18 96.3 71 70.4
CiPaw.12G067800 Carya illinoinensis HOM05D000317 ORTHO05D000032 1.8e-18 95.5 71 71.8
Glyma.09G207300 Glycine max HOM05D000317 ORTHO05D000032 1.8e-18 95.5 71 66.2
Gohir.A12G206500 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.8e-18 95.5 75 66.7
Gohir.D12G208900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.8e-18 95.5 75 66.7
Lj2g0009365 Lotus japonicus HOM05D000317 ORTHO05D000032 1.8e-18 95.5 72 68.1
Gorai.008G224400 Gossypium raimondii HOM05D000317 ORTHO05D000032 3.0e-18 94.7 75 66.7
Sabra03G0065000 Salix brachista HOM05D000317 ORTHO05D000032 3.0e-18 94.7 71 67.6
Lalb_Chr16g0381111 Lupinus albus HOM05D000317 ORTHO05D000032 3.9e-18 94.4 71 67.6
Actinidia14782 Actinidia chinensis HOM05D000317 ORTHO05D000032 5.1e-18 94.0 71 73.2
Ca_25184_v3 Cicer arietinum L. HOM05D000317 ORTHO05D000032 5.1e-18 94.0 72 66.7
Hma1.2p1_1027F.1_g249500 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 1.1e-17 92.8 70 70.0
Phvul.002G137300 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 1.1e-17 92.8 71 66.2
QL12p001426 Quercus lobata HOM05D000317 ORTHO05D000032 1.1e-17 92.8 70 72.9
Actinidia01321 Actinidia chinensis HOM05D000317 ORTHO05D000032 2.5e-17 91.7 73 71.2
Potri.003G096300 Populus trichocarpa HOM05D000317 ORTHO05D000032 2.5e-17 91.7 70 67.1
Nitab4.5_0001632g0010 Nicotiana tabacum HOM05D000317 ORTHO05D000032 5.7e-17 90.5 74 70.3
Lalb_Chr05g0215791 Lupinus albus HOM05D000317 ORTHO05D000032 7.4e-17 90.1 71 63.4
Nitab4.5_0000109g0060 Nicotiana tabacum HOM05D000317 ORTHO05D000032 9.7e-17 89.7 72 68.1
Peaxi162Scf00045g00221 Petunia axillaris HOM05D000317 ORTHO05D000032 2.2e-16 88.6 73 64.4
Manes.17G010300 Manihot esculenta HOM05D000317 ORTHO05D000032 2.8e-16 88.2 72 69.4
Sed0022531 Sechium edule HOM05D000317 ORTHO05D000032 2.8e-16 88.2 75 65.3
CiPaw.11G098000 Carya illinoinensis HOM05D000317 ORTHO05D000032 3.7e-16 87.8 71 70.4
Medtr5g029470 Medicago truncatula HOM05D000317 ORTHO05D000032 6.3e-16 87.0 73 64.4
Actinidia18127 Actinidia chinensis HOM05D000317 ORTHO05D000032 1.1e-15 86.3 72 66.7
Potri.001G137600 Populus trichocarpa HOM05D000317 ORTHO05D000032 1.1e-15 86.3 71 63.4
Cfa012523 Carpinus fangiana HOM05D000317 ORTHO05D000032 1.4e-15 85.9 70 67.1
Sabra01G0106200 Salix brachista HOM05D000317 ORTHO05D000032 1.4e-15 85.9 70 60.0
TPR.G19428 Trifolium pratense HOM05D000317 ORTHO05D000032 1.4e-15 85.9 73 63.0
Sopen06g021670 Solanum pennellii HOM05D000317 ORTHO05D000032 1.8e-15 85.5 73 64.4
Psat2g138760 Pisum sativum HOM05D000317 ORTHO05D000032 2.4e-15 85.1 73 61.6
Lsat_1_v5_gn_3_18021 Lactuca sativa HOM05D000317 ORTHO05D000032 5.3e-15 84.0 74 63.5
arahy.Tifrunner.gnm1.ann1.6E07G6 Arachis hypogaea HOM05D000317 ORTHO05D000032 6.9e-15 83.6 80 60.0
arahy.Tifrunner.gnm1.ann1.P7Z227 Arachis hypogaea HOM05D000317 ORTHO05D000032 6.9e-15 83.6 80 60.0
MELO3C003436.2 Cucumis melo HOM05D000317 ORTHO05D000032 6.9e-15 83.6 76 64.5
CsaV3_3G048880 Cucumis sativus L. HOM05D000317 ORTHO05D000032 6.9e-15 83.6 76 64.5
Solyc08g005260.2 Solanum lycopersicum HOM05D000317 ORTHO05D000032 6.9e-15 83.6 74 62.2
PGSC0003DMG400016767 Solanum tuberosum HOM05D000317 ORTHO05D000032 6.9e-15 83.6 72 63.9
Atru.chr6.1515 Acer truncatum HOM05D000317 ORTHO05D000032 9.0e-15 83.2 75 64.0
MSTRG.12174 Avicennia marina HOM05D000317 ORTHO05D000032 1.2e-14 82.8 72 61.1
VMungo0251G0631 Vigna mungo HOM05D000317 ORTHO05D000032 1.2e-14 82.8 71 60.6
TWI60G1722 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 2.0e-14 82.0 73 64.4
ClCG09G011660 Citrullus lanatus HOM05D000317 ORTHO05D000032 2.6e-14 81.6 76 63.2
Sopen08g001280 Solanum pennellii HOM05D000317 ORTHO05D000032 2.6e-14 81.6 74 60.8
Hma1.2p1_2886F.1_g329910 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 4.5e-14 80.9 71 62.0
Solyc06g066340.4 Solanum lycopersicum HOM05D000317 ORTHO05D000032 5.9e-14 80.5 72 61.1
EL10Ac5g12020 Beta vulgaris HOM05D000317 ORTHO05D000032 7.7e-14 80.1 74 66.2
Hma1.2p1_0870F.1_g230865 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 7.7e-14 80.1 69 62.3
TAR629G0315 Trochodendron aralioides HOM05D000317 ORTHO05D000032 7.7e-14 80.1 71 57.7
HanXRQChr17g0538151 Helianthus annuus HOM05D000317 ORTHO05D000032 1.0e-13 79.7 73 61.6
TWI81G0528 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 1.0e-13 79.7 72 63.9
TAR374G0494 Trochodendron aralioides HOM05D000317 ORTHO05D000032 1.0e-13 79.7 71 57.7
Rhsim07G0131500 Rhododendron simsii HOM05D000317 ORTHO05D000032 1.3e-13 79.3 71 66.2
Lalb_Chr09g0325511 Lupinus albus HOM05D000317 ORTHO05D000032 1.7e-13 79.0 71 62.0
PGSC0003DMG400018472 Solanum tuberosum HOM05D000317 ORTHO05D000032 1.7e-13 79.0 73 60.3
Peaxi162Scf00185g00095 Petunia axillaris HOM05D000317 ORTHO05D000032 2.2e-13 78.6 72 59.7
HanXRQChr06g0172741 Helianthus annuus HOM05D000317 ORTHO05D000032 2.9e-13 78.2 73 60.3
CAN.G474.20 Capsicum annuum HOM05D000317 ORTHO05D000032 3.8e-13 77.8 75 62.7
Eucgr.E00246 Eucalyptus grandis HOM05D000317 ORTHO05D000032 5.0e-13 77.4 70 61.4
AUR62007349 Chenopodium quinoa HOM05D000317 ORTHO05D000032 6.5e-13 77.0 76 64.5
Oeu027085.1 Olea europaea HOM05D000317 ORTHO05D000032 6.5e-13 77.0 72 62.5
Sed0026002 Sechium edule HOM05D000317 ORTHO05D000032 6.5e-13 77.0 75 58.7
SGA_v2.0_scaffold36G14299 Striga asiatica HOM05D000317 ORTHO05D000032 8.5e-13 76.6 73 61.6
AUR62018645 Chenopodium quinoa HOM05D000317 ORTHO05D000032 1.4e-12 75.9 76 63.2
Aqoxy3G02188 Aquilegia oxysepala HOM05D000317 ORTHO05D000032 2.5e-12 75.1 70 57.1
Eucgr.E00234 Eucalyptus grandis HOM05D000317 ORTHO05D000032 2.5e-12 75.1 71 59.2
PSO063G4639 Papaver somniferum HOM05D000317 ORTHO05D000032 4.2e-12 74.3 72 56.9
PSO782G1527 Papaver somniferum HOM05D000317 ORTHO05D000032 4.2e-12 74.3 72 56.9
MD06G1026200 Malus domestica HOM05D000317 ORTHO05D000032 7.2e-12 73.6 76 59.2
MD16G1279800 Malus domestica HOM05D000317 ORTHO05D000032 7.2e-12 73.6 76 59.2
Cpa.g.sc208.13 Carica papaya HOM05D000317 ORTHO05D000032 9.4e-12 73.2 71 60.6
Nn3g19401 Nelumbo nucifera HOM05D000317 ORTHO05D000032 9.4e-12 73.2 71 54.9
MSTRG.13738 Avicennia marina HOM05D000317 ORTHO05D000032 1.2e-11 72.8 72 56.9
Migut.E00748 Erythranthe guttata HOM05D000317 ORTHO05D000032 1.6e-11 72.4 70 60.0
Lj8C309T6 Lonicera japonica HOM05D000317 ORTHO05D000032 1.6e-11 72.4 73 57.5
TAR375G0136 Trochodendron aralioides HOM05D000317 ORTHO05D000032 1.6e-11 72.4 72 54.2
Ah.12g055460 Amaranthus hybridus HOM05D000317 ORTHO05D000032 2.1e-11 72.0 74 62.2
HanXRQChr13g0415631 Helianthus annuus HOM05D000317 ORTHO05D000032 4.6e-11 70.9 72 59.7
PGR042G2955 Punica granatum HOM05D000317 ORTHO05D000032 6.1e-11 70.5 71 52.1
Eucgr.D02225 Eucalyptus grandis HOM05D000317 ORTHO05D000032 1.0e-10 69.7 72 59.7
Ciclev10001292m.g Citrus clementina HOM05D000317 ORTHO05D000032 1.4e-10 69.3 72 59.7
Nn1g00197 Nelumbo nucifera HOM05D000317 ORTHO05D000032 1.4e-10 69.3 70 52.9
DCAR_004273 Daucus carota HOM05D000317 ORTHO05D000032 2.3e-10 68.6 75 56.0
FAN18G4490 Fragaria x ananassa HOM05D000317 ORTHO05D000032 2.3e-10 68.6 74 59.5
Manes.15G185500 Manihot esculenta HOM05D000317 ORTHO05D000032 3.0e-10 68.2 71 57.7
TPR.G3355 Trifolium pratense HOM05D000317 ORTHO05D000032 3.0e-10 68.2 73 50.7
ECA246G0064 Erigeron canadensis HOM05D000317 ORTHO05D000032 5.1e-10 67.4 76 57.9
THA.LOC104798490 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 5.1e-10 67.4 72 55.6
FvH4_5g22990 Fragaria vesca HOM05D000317 ORTHO05D000032 8.8e-10 66.6 73 58.9
FAN04G1143 Fragaria x ananassa HOM05D000317 ORTHO05D000032 8.8e-10 66.6 73 58.9
FAN08G2613 Fragaria x ananassa HOM05D000317 ORTHO05D000032 8.8e-10 66.6 73 58.9
FAN13G3098 Fragaria x ananassa HOM05D000317 ORTHO05D000032 8.8e-10 66.6 73 58.9
FAN18G1634 Fragaria x ananassa HOM05D000317 ORTHO05D000032 8.8e-10 66.6 73 58.9
RcHm_v2.0_Chr7g0211731 Rosa chinensis HOM05D000317 ORTHO05D000032 8.8e-10 66.6 72 56.9
Prupe.5G028400 Prunus persica HOM05D000317 ORTHO05D000032 2.0e-09 65.5 77 53.2
DCAR_008227 Daucus carota HOM05D000317 ORTHO05D000032 2.5e-09 65.1 75 53.3
Lsat_1_v5_gn_6_3581 Lactuca sativa HOM05D000317 ORTHO05D000032 2.5e-09 65.1 73 53.4
Hund11189 Selenicereus undatus HOM05D000317 ORTHO05D000032 3.3e-09 64.7 75 53.3
SGA_v2.0_scaffold198G41076 Striga asiatica HOM05D000317 ORTHO05D000032 4.3e-09 64.3 70 54.3
Haze_08141 Corylus avellana HOM05D000317 ORTHO05D000032 7.4e-09 63.5 51 62.7
Carub.0001s3057 Capsella rubella HOM05D000317 ORTHO05D000032 9.7e-09 63.2 70 58.6
Aa31LG2G13760 Aethionema arabicum HOM05D000317 ORTHO05D000032 1.3e-08 62.8 70 51.4
A05p25090 Brassica napus HOM05D000317 ORTHO05D000032 2.2e-08 62.0 70 54.3
BraA05t21391Z Brassica rapa HOM05D000317 ORTHO05D000032 2.2e-08 62.0 70 54.3
Medtr8g066310 Medicago truncatula HOM05D000317 ORTHO05D000032 2.2e-08 62.0 71 47.9
Phvul.003G283000 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 2.2e-08 62.0 70 52.9
ECA233G5042 Erigeron canadensis HOM05D000317 ORTHO05D000032 2.8e-08 61.6 76 47.4
TAR371G1026 Trochodendron aralioides HOM05D001074 ORTHO05D001188 3.7e-08 61.2 65 49.2
THA.LOC104811356 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 4.8e-08 60.8 72 52.8
THA.LOC104814418 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 4.8e-08 60.8 72 52.8
BcaC05g27897 Brassica carinata HOM05D000317 ORTHO05D000032 6.3e-08 60.5 69 53.6
BcaC05g27898 Brassica carinata HOM05D000317 ORTHO05D000032 6.3e-08 60.5 69 53.6
C05p39050 Brassica napus HOM05D000317 ORTHO05D000032 6.3e-08 60.5 69 53.6
BolC5t32642H Brassica oleracea HOM05D000317 ORTHO05D000032 6.3e-08 60.5 69 53.6
AL1G46380 Arabidopsis lyrata HOM05D000317 ORTHO05D000032 8.2e-08 60.1 70 57.1
AT1G32240 Arabidopsis thaliana HOM05D000317 ORTHO05D000032 8.2e-08 60.1 70 57.1
BcaB03g13749 Brassica carinata HOM05D000317 ORTHO05D000032 8.2e-08 60.1 70 52.9
Thhalv10007844m.g Eutrema salsugineum HOM05D000317 ORTHO05D000032 8.2e-08 60.1 70 57.1
CAN.G137.8 Capsicum annuum HOM05D000317 ORTHO05D000032 1.1e-07 59.7 72 54.2
Sc01g0007180 Simmondsia chinensis HOM05D000317 ORTHO05D000032 1.1e-07 59.7 84 52.4
SHI07422 Sapria himalayana HOM05D000317 ORTHO05D000032 1.4e-07 59.3 72 43.1
Sp1g27920 Schrenkiella parvula HOM05D000317 ORTHO05D000032 1.4e-07 59.3 70 51.4
TAR633G2202 Trochodendron aralioides HOM05D001074 ORTHO05D002629 1.8e-07 58.9 66 47.0
Hund14566 Selenicereus undatus HOM05D000317 ORTHO05D000032 4.1e-07 57.8 88 53.4
BcaB07g32904 Brassica carinata HOM05D000317 ORTHO05D000032 5.3e-07 57.4 70 55.7
ECA240G3054 Erigeron canadensis HOM05D000317 ORTHO05D000032 5.3e-07 57.4 62 56.5
CSS0023934 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 6.9e-07 57.0 70 47.1
PGR031G0812 Punica granatum HOM05D000317 ORTHO05D000032 6.9e-07 57.0 70 51.4
A09p33900 Brassica napus HOM05D000317 ORTHO05D000032 9.1e-07 56.6 70 54.3
BraA09t38937Z Brassica rapa HOM05D000317 ORTHO05D000032 9.1e-07 56.6 70 54.3
CDE02G4480 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 9.1e-07 56.6 70 48.6
CDE11G1153 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 1.2e-06 56.2 71 47.9
CsaV3_3G001390 Cucumis sativus L. HOM05D000317 ORTHO05D000032 1.2e-06 56.2 89 43.8
Peaxi162Scf00170g00063 Petunia axillaris HOM05D000317 ORTHO05D000032 1.2e-06 56.2 51 66.7
CARHR031610 Cardamine hirsuta HOM05D000317 ORTHO05D000032 2.6e-06 55.1 70 50.0
C05p31700 Brassica napus HOM05D000317 ORTHO05D000032 3.4e-06 54.7 70 54.3
BolC5t31895H Brassica oleracea HOM05D000317 ORTHO05D000032 3.4e-06 54.7 70 54.3
ClCG10G001320 Citrullus lanatus HOM05D000317 ORTHO05D000032 3.4e-06 54.7 94 43.6
Glyma.01G014800 Glycine max HOM05D000317 ORTHO05D000032 3.4e-06 54.7 46 67.4
TAR636G1843 Trochodendron aralioides HOM05D000317 ORTHO05D000032 7.7e-06 53.5 71 45.1


User provided reference genes

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