Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00238 Vaccinium macrocarpon HOM05D003603 ORTHO05D004186 4.0e-116 421.4 206 100.0
QL12p000179 Quercus lobata HOM05D003603 ORTHO05D004186 1.4e-39 167.2 195 51.3
Rhsim11G0028200 Rhododendron simsii HOM05D003603 ORTHO05D004186 2.0e-38 163.3 188 53.7
Actinidia01335 Actinidia chinensis HOM05D003603 ORTHO05D004186 9.1e-36 154.5 197 50.8
Dinv29021 Davidia involucrata HOM05D003603 ORTHO05D004186 9.1e-36 154.5 197 50.3
Dinv06911 Davidia involucrata HOM05D003603 ORTHO05D004186 2.7e-35 152.9 198 49.5
Rhsim07G0134300 Rhododendron simsii HOM05D003603 ORTHO05D004186 2.7e-35 152.9 217 45.6
Actinidia29278 Actinidia chinensis HOM05D003603 ORTHO05D004186 1.5e-33 147.1 198 49.0
Hma1.2p1_1819F.1_g304070 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 2.1e-32 143.3 205 48.8
CSS0028298 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 2.8e-32 142.9 200 46.5
CSS0006858 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 6.1e-32 141.7 200 47.5
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 6.1e-32 141.7 195 47.2
CSS0011703 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 8.0e-32 141.4 197 44.7
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 8.0e-32 141.4 199 46.2
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 1.0e-31 141.0 196 46.9
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 3.0e-31 139.4 191 45.0
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 6.8e-31 138.3 195 46.2
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 6.8e-31 138.3 195 46.2
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 6.8e-31 138.3 196 46.4
VMungo1215G0432 Vigna mungo HOM05D003603 ORTHO05D004186 1.5e-30 137.1 196 46.4
Nn3g19353 Nelumbo nucifera HOM05D003603 ORTHO05D004186 2.6e-30 136.3 193 45.6
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 3.4e-30 136.0 191 47.1
Potri.001G135000 Populus trichocarpa HOM05D003603 ORTHO05D004186 4.4e-30 135.6 195 44.6
Prupe.5G026000 Prunus persica HOM05D003603 ORTHO05D004186 7.5e-30 134.8 195 45.1
Eucgr.D02636 Eucalyptus grandis HOM05D003603 ORTHO05D004186 9.8e-30 134.4 196 45.9
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 9.8e-30 134.4 195 46.2
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 9.8e-30 134.4 197 45.7
Ciclev10002760m.g Citrus clementina HOM05D003603 ORTHO05D004186 1.3e-29 134.0 200 44.5
TAR375G0833 Trochodendron aralioides HOM05D003603 ORTHO05D004186 1.7e-29 133.7 194 44.8
MSTRG.25700 Avicennia marina HOM05D003603 ORTHO05D004186 2.2e-29 133.3 200 42.5
Lj2g0008166 Lotus japonicus HOM05D003603 ORTHO05D004186 2.2e-29 133.3 195 44.6
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 2.8e-29 132.9 195 45.6
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 3.7e-29 132.5 196 45.4
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 3.7e-29 132.5 195 45.1
Sabra01G0104400 Salix brachista HOM05D003603 ORTHO05D004186 3.7e-29 132.5 195 43.6
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 4.9e-29 132.1 196 45.4
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 4.9e-29 132.1 196 45.4
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 4.9e-29 132.1 196 45.4
Glyma.01G010900 Glycine max HOM05D003603 ORTHO05D004186 4.9e-29 132.1 196 44.4
MD06G1024900 Malus domestica HOM05D003603 ORTHO05D004186 4.9e-29 132.1 195 45.6
Manes.15G192766 Manihot esculenta HOM05D003603 ORTHO05D004186 4.9e-29 132.1 195 44.1
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 8.3e-29 131.3 196 45.4
TWI81G0448 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 8.3e-29 131.3 195 44.6
FAN04G2484 Fragaria x ananassa HOM05D003603 ORTHO05D004186 1.1e-28 131.0 196 45.4
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 1.4e-28 130.6 196 45.4
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 1.4e-28 130.6 196 43.4
Thecc.03G312100 Theobroma cacao HOM05D003603 ORTHO05D004186 1.8e-28 130.2 195 43.6
Lj8A318T46 Lonicera japonica HOM05D003603 ORTHO05D004186 3.1e-28 129.4 195 43.1
Manes.17G016002 Manihot esculenta HOM05D003603 ORTHO05D004186 4.1e-28 129.0 201 43.3
TWI15G1018 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 4.1e-28 129.0 196 42.3
CANSAT21G0457 Cannabis sativa HOM05D003603 ORTHO05D004186 5.4e-28 128.6 190 43.2
CANSAT56G3990 Cannabis sativa HOM05D003603 ORTHO05D004186 5.4e-28 128.6 190 43.2
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 5.4e-28 128.6 197 45.7
ECA233G2030 Erigeron canadensis HOM05D003603 ORTHO05D004186 7.0e-28 128.3 198 42.4
EL10Ac5g11930 Beta vulgaris HOM05D003603 ORTHO05D004186 9.2e-28 127.9 195 39.5
SGA_v2.0_scaffold96G29046 Striga asiatica HOM05D003603 ORTHO05D004186 9.2e-28 127.9 198 40.4
Hma1.2p1_0803F.1_g220845 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 1.2e-27 127.5 198 44.9
Hma1.2p1_0803F.1_g220850 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 1.2e-27 127.5 198 44.9
Oeu027879.1 Olea europaea HOM05D003603 ORTHO05D004186 7.8e-27 124.8 189 45.5
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 1.7e-26 123.6 192 43.2
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 1.7e-26 123.6 208 42.3
Oeu017100.1 Olea europaea HOM05D003603 ORTHO05D004186 2.3e-26 123.2 194 44.3
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 2.9e-26 122.9 193 42.0
Cc08_g03850 Coffea canephora HOM05D003603 ORTHO05D004186 3.8e-26 122.5 198 44.4
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 5.0e-26 122.1 197 44.7
MSTRG.1790 Avicennia marina HOM05D003603 ORTHO05D004186 6.6e-26 121.7 196 42.9
Nitab4.5_0005370g0020 Nicotiana tabacum HOM05D003603 ORTHO05D004186 6.6e-26 121.7 198 43.4
Peaxi162Scf00052g00329 Petunia axillaris HOM05D003603 ORTHO05D004186 6.6e-26 121.7 198 43.4
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 8.6e-26 121.3 193 41.5
Gohir.A11G028400 Gossypium hirsutum HOM05D003603 ORTHO05D004186 8.6e-26 121.3 177 46.3
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 1.1e-25 120.9 193 41.5
CiPaw.12G069800 Carya illinoinensis HOM05D003603 ORTHO05D004186 1.5e-25 120.6 188 43.6
DCAR_004264 Daucus carota HOM05D003603 ORTHO05D004186 1.9e-25 120.2 204 41.7
Nitab4.5_0000301g0080 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.9e-25 120.2 194 43.3
PGSC0003DMG400009296 Solanum tuberosum HOM05D003603 ORTHO05D004186 2.5e-25 119.8 198 43.4
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 3.3e-25 119.4 193 41.5
AUR62027323 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.3e-25 119.0 193 39.4
Solyc08g076180.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 4.3e-25 119.0 198 43.4
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 5.6e-25 118.6 193 41.5
AUR62007409 Chenopodium quinoa HOM05D003603 ORTHO05D004186 5.6e-25 118.6 193 39.4
Gohir.D11G030800 Gossypium hirsutum HOM05D003603 ORTHO05D004186 5.6e-25 118.6 177 45.8
Gorai.007G033700 Gossypium raimondii HOM05D003603 ORTHO05D004186 5.6e-25 118.6 177 45.8
Ah.07g201360 Amaranthus hybridus HOM05D003603 ORTHO05D004186 7.3e-25 118.2 194 38.7
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 7.3e-25 118.2 192 39.6
Aqoxy3G02143 Aquilegia oxysepala HOM05D003603 ORTHO05D004186 9.5e-25 117.9 194 41.8
DCAR_008204 Daucus carota HOM05D003603 ORTHO05D004186 9.5e-25 117.9 198 40.4
Hund11105 Selenicereus undatus HOM05D003603 ORTHO05D004186 1.2e-24 117.5 193 39.4
Sopen08g024820 Solanum pennellii HOM05D003603 ORTHO05D004186 1.2e-24 117.5 198 42.9
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 2.1e-24 116.7 194 38.1
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 3.6e-24 115.9 195 37.4
HanXRQChr13g0404821 Helianthus annuus HOM05D003603 ORTHO05D004186 4.7e-24 115.5 191 40.8
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 6.1e-24 115.2 192 39.1
Ah.12g055980 Amaranthus hybridus HOM05D003603 ORTHO05D004186 8.0e-24 114.8 195 39.0
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 1.0e-23 114.4 191 40.3
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 1.0e-23 114.4 191 40.3
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 1.4e-23 114.0 196 38.3
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 1.4e-23 114.0 191 40.3
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 1.4e-23 114.0 191 40.3
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 1.4e-23 114.0 191 40.3
Migut.A00590 Erythranthe guttata HOM05D003603 ORTHO05D004186 1.4e-23 114.0 196 39.3
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 1.4e-23 114.0 192 39.1
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 1.8e-23 113.6 194 37.1
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 1.8e-23 113.6 194 36.1
TAR636G1298 Trochodendron aralioides HOM05D003603 ORTHO05D004186 1.8e-23 113.6 194 37.6
HanXRQChr03g0082031 Helianthus annuus HOM05D003603 ORTHO05D004186 2.3e-23 113.2 191 40.8
AL1G46040 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 3.0e-23 112.8 192 40.1
BcaC05g27220 Brassica carinata HOM05D003603 ORTHO05D004186 3.0e-23 112.8 186 41.4
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 3.0e-23 112.8 189 40.2
BolC5t31853H Brassica oleracea HOM05D003603 ORTHO05D004186 3.0e-23 112.8 186 41.4
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 3.0e-23 112.8 189 40.2
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 6.8e-23 111.7 199 39.2
Peaxi162Scf00185g01122 Petunia axillaris HOM05D003603 ORTHO05D004186 8.9e-23 111.3 187 38.0
CAN.G474.26 Capsicum annuum HOM05D003603 ORTHO05D004186 1.5e-22 110.5 191 38.2
Migut.E01327 Erythranthe guttata HOM05D003603 ORTHO05D004186 1.5e-22 110.5 200 37.5
Hund14334 Selenicereus undatus HOM05D003603 ORTHO05D004186 1.5e-22 110.5 196 39.3
BcaB03g13776 Brassica carinata HOM05D003603 ORTHO05D004186 2.0e-22 110.2 191 39.3
SalBow1G3570 Salvia bowleyana HOM05D003603 ORTHO05D004186 2.6e-22 109.8 198 38.9
SalBow1G4269 Salvia bowleyana HOM05D003603 ORTHO05D004186 2.6e-22 109.8 198 38.9
Aa31LG9G15610 Aethionema arabicum HOM05D003603 ORTHO05D004186 3.4e-22 109.4 197 37.6
SalBow8G3962 Salvia bowleyana HOM05D003603 ORTHO05D004186 3.4e-22 109.4 191 39.3
Sed0026512 Sechium edule HOM05D003603 ORTHO05D004186 3.4e-22 109.4 188 41.0
Lsat_1_v5_gn_6_17681 Lactuca sativa HOM05D003603 ORTHO05D004186 4.4e-22 109.0 204 38.7
MELO3C013813.2 Cucumis melo HOM05D003603 ORTHO05D004186 7.5e-22 108.2 194 41.2
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 9.8e-22 107.8 194 36.6
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 9.8e-22 107.8 199 38.7
Nitab4.5_0002429g0050 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.3e-21 107.5 191 39.8
CsaV3_3G001240 Cucumis sativus L. HOM05D003603 ORTHO05D004186 1.7e-21 107.1 194 40.7
Psat2g140080 Pisum sativum HOM05D003603 ORTHO05D004186 1.7e-21 107.1 199 39.7
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 2.9e-21 106.3 200 37.5
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 1.8e-20 103.6 190 35.3
Nitab4.5_0001632g0070 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.8e-20 103.6 190 38.9
SGA_v2.0_scaffold111G31383 Striga asiatica HOM05D003603 ORTHO05D004186 5.4e-20 102.1 191 37.2
HPP92_005435 Vanilla planifolia HOM05D003603 ORTHO05D004186 3.5e-19 99.4 185 32.4
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 6.0e-19 98.6 205 36.1
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 6.0e-19 98.6 205 36.1
BraA05t19955Z Brassica rapa HOM05D003603 ORTHO05D004186 6.0e-19 98.6 199 35.2
HPP92_005441 Vanilla planifolia HOM05D003603 ORTHO05D004186 7.8e-19 98.2 185 32.4
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 1.0e-18 97.8 189 33.9
PGSC0003DMG400016765 Solanum tuberosum HOM05D003603 ORTHO05D004186 1.7e-18 97.1 187 35.3
A05p10140 Brassica napus HOM05D003603 ORTHO05D004186 3.0e-18 96.3 199 34.7
QL07p005886 Quercus lobata HOM05D003603 ORTHO05D004186 3.0e-18 96.3 60 76.7
Sopen06g021730 Solanum pennellii HOM05D003603 ORTHO05D004186 3.0e-18 96.3 187 34.8
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 3.9e-18 95.9 184 34.8
ClCG10G001200 Citrullus lanatus HOM05D003603 ORTHO05D004186 4.3e-17 92.4 175 38.9
Solyc06g066290.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 4.3e-17 92.4 187 34.2
C04p64400 Brassica napus HOM05D003603 ORTHO05D004186 5.6e-17 92.0 204 35.3
BolC4t27924H Brassica oleracea HOM05D003603 ORTHO05D004186 5.6e-17 92.0 204 35.3
Gorai.003G186200 Gossypium raimondii HOM05D003080 ORTHO05D003601 9.5e-17 91.3 170 39.4
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 2.1e-16 90.1 173 33.5
Os02g0697700 Oryza sativa ssp. japonica HOM05D003603 ORTHO05D004186 2.8e-16 89.7 192 33.9
BcaNung07274 Brassica carinata HOM05D003603 ORTHO05D004186 3.6e-16 89.4 200 35.5
Zm00001eb251500 Zea mays HOM05D003603 ORTHO05D004186 3.6e-16 89.4 192 31.8
Duzib205G1823 Durio zibethinus HOM05D003603 ORTHO05D004186 6.2e-16 88.6 62 66.1
Cfa012536 Carpinus fangiana HOM05D003603 ORTHO05D004186 4.0e-15 85.9 60 70.0
HPP92_014701 Vanilla planifolia HOM05D003603 ORTHO05D004186 8.9e-15 84.7 171 35.1
AT2G35585 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 1.5e-14 84.0 61 67.2
unitig_32.g11622 Utricularia gibba HOM05D003603 ORTHO05D004186 2.6e-14 83.2 189 32.8
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 5.8e-14 82.0 201 28.9
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 7.5e-14 81.6 179 31.3
Peaxi162Scf00045g00444 Petunia axillaris HOM05D003603 ORTHO05D004186 7.5e-14 81.6 180 34.4
BcaB07g32857 Brassica carinata HOM05D003603 ORTHO05D004186 9.8e-14 81.3 186 35.5
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 9.8e-14 81.3 192 30.2
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.9e-13 79.0 60 58.3
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.9e-13 79.0 60 58.3
VMungo1383G2097 Vigna mungo HOM05D003603 ORTHO05D004186 8.3e-13 78.2 57 68.4
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 1.6e-11 73.9 150 31.3
MBI13_g04781_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 3.5e-11 72.8 62 53.2
Lj7C124G0 Lonicera japonica HOM05D003603 ORTHO05D004186 4.6e-11 72.4 64 59.4
BcaC02g11674 Brassica carinata HOM05D003603 ORTHO05D004186 1.7e-10 70.5 204 28.9
C05p31290 Brassica napus HOM05D003603 ORTHO05D004186 2.3e-10 70.1 69 59.4
BcaC02g11672 Brassica carinata HOM05D003603 ORTHO05D004186 6.6e-10 68.6 204 28.9
vmacro14211 Vaccinium macrocarpon HOM05D003603 ORTHO05D004186 8.6e-10 68.2 54 70.4
THA.LOC104814407 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 1.9e-09 67.0 73 53.4
MBI05_g12773_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 3.6e-08 62.8 44 61.4
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 6.2e-08 62.0 64 43.8
Peaxi162Scf00009g00286 Petunia axillaris HOM05D003603 ORTHO05D004186 1.4e-07 60.8 174 31.6
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 1.5e-06 57.4 69 40.6
GSVIVG01011592001 Vitis vinifera HOM05D008187 ORTHO05D009830 2.6e-06 56.6 37 54.1
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 3.4e-06 56.2 59 37.3


User provided reference genes

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