Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 3.6e-109 398.3 206 100.0
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 2.2e-69 266.2 212 75.0
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 1.1e-68 263.8 202 76.7
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 7.4e-62 241.1 204 68.6
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.8e-60 236.5 205 65.9
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 2.0e-59 233.0 164 75.0
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 5.0e-58 228.4 146 77.4
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 1.6e-56 223.4 203 65.5
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 7.9e-56 221.1 139 80.6
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.4e-55 220.3 139 79.9
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 1.5e-54 216.9 164 72.0
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 2.0e-54 216.5 139 78.4
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.6e-54 216.1 193 64.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 2.6e-54 216.1 144 75.7
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 3.3e-54 215.7 175 65.7
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.4e-54 215.3 141 80.9
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 5.7e-54 214.9 141 80.9
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 7.4e-54 214.5 148 76.4
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 9.7e-54 214.2 141 80.1
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.3e-53 213.8 145 73.1
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 2.2e-53 213.0 144 77.8
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 2.8e-53 212.6 143 77.6
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 4.8e-53 211.8 137 81.0
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 4.8e-53 211.8 185 63.2
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 6.3e-53 211.5 185 63.2
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.4e-52 210.3 186 61.3
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 3.1e-52 209.1 146 74.7
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 4.1e-52 208.8 186 60.2
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 5.3e-52 208.4 146 74.0
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 9.1e-52 207.6 176 65.3
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.2e-51 207.2 141 77.3
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 1.2e-51 207.2 205 59.0
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 2.0e-51 206.5 136 76.5
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 2.0e-51 206.5 148 73.0
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 3.5e-51 205.7 209 58.4
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 3.5e-51 205.7 194 63.4
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.0e-50 204.1 114 85.1
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.0e-50 204.1 197 59.9
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 2.9e-50 202.6 203 59.6
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 5.0e-50 201.8 169 65.1
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 6.5e-50 201.4 140 75.0
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 8.5e-50 201.1 198 60.1
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 1.1e-49 200.7 205 58.5
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.1e-49 200.7 200 58.0
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.1e-49 200.7 188 60.6
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 1.5e-49 200.3 134 76.9
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.9e-49 199.9 134 76.9
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 4.2e-49 198.7 134 76.1
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 5.5e-49 198.4 141 72.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 9.4e-49 197.6 188 59.6
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 9.4e-49 197.6 191 59.2
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 2.1e-48 196.4 135 71.9
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.1e-48 196.4 201 57.7
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 3.6e-48 195.7 128 77.3
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.8e-47 193.4 135 71.1
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.8e-47 193.4 192 56.2
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 2.3e-47 193.0 152 66.4
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 4.0e-47 192.2 141 70.9
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 1.2e-46 190.7 202 57.4
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.5e-46 190.3 166 63.9
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.5e-46 190.3 133 72.9
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.0e-46 189.9 147 68.0
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 2.6e-46 189.5 161 62.1
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 3.3e-46 189.1 134 67.9
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 3.3e-46 189.1 159 62.3
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 9.7e-46 187.6 161 62.1
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 2.2e-45 186.4 138 68.1
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 2.2e-45 186.4 138 68.1
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 2.2e-45 186.4 138 68.1
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 2.8e-45 186.0 139 69.1
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.8e-45 186.0 143 72.7
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 3.7e-45 185.7 128 73.4
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 4.8e-45 185.3 137 70.8
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 6.3e-45 184.9 138 67.4
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 8.2e-45 184.5 202 54.0
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 8.2e-45 184.5 202 54.0
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 4.1e-44 182.2 96 87.5
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 4.1e-44 182.2 136 68.4
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 5.3e-44 181.8 164 59.8
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.6e-43 180.3 105 78.1
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 1.7e-42 176.8 200 54.0
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.9e-41 173.3 110 72.7
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 3.2e-41 172.6 146 66.4
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 2.7e-40 169.5 105 76.2
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 2.7e-40 169.5 120 65.0
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.4e-39 167.2 229 45.4
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.8e-39 166.8 120 70.0
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 2.3e-39 166.4 106 75.5
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 3.4e-38 162.5 142 60.6
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 2.2e-37 159.8 119 70.6
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 2.8e-37 159.5 137 62.8
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 4.8e-37 158.7 162 58.6
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.4e-36 156.4 195 51.8
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 7.7e-35 151.4 142 64.8
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 5.0e-34 148.7 82 86.6
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.1e-33 147.5 171 48.5
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 1.6e-32 143.7 77 80.5
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 5.2e-31 138.7 83 75.9
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.0e-30 136.7 124 53.2
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 5.4e-28 128.6 102 55.9
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.7e-27 126.3 130 54.6
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.5e-25 120.6 84 72.6
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.5e-25 120.6 84 72.6
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.5e-25 120.6 84 72.6
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.3e-25 118.2 126 56.3
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 3.6e-24 115.9 131 46.6
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 6.1e-24 115.2 145 49.7
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 8.0e-24 114.8 84 73.8
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 3.0e-23 112.8 153 48.4
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 4.0e-23 112.5 95 53.7
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 4.9e-21 105.5 61 86.9
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 4.9e-21 105.5 86 66.3
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 6.4e-21 105.1 55 90.9
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.1e-20 104.4 94 62.8
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 2.7e-19 99.8 49 85.7
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 4.6e-19 99.0 91 54.9
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 5.0e-18 95.5 59 76.3
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 7.3e-17 91.7 81 58.0
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 4.4e-14 82.4 113 52.2
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-14 81.3 51 66.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.7e-13 79.3 127 38.6
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 1.1e-12 77.8 116 46.6
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 2.3e-10 70.1 41 78.0
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 4.3e-09 65.9 83 45.8
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 5.6e-09 65.5 108 47.2
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 7.3e-09 65.1 52 71.2
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 1.1e-07 61.2 97 43.3
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 1.1e-07 61.2 97 43.3
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 1.1e-07 61.2 106 45.3
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 2.0e-06 57.0 40 70.0
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 3.4e-06 56.2 65 50.8
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 4.4e-06 55.8 41 73.2
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 4.4e-06 55.8 41 73.2
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 4.4e-06 55.8 41 73.2
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 4.4e-06 55.8 41 73.2
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 9.9e-06 54.7 36 80.6


User provided reference genes

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