Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.7e-126 456.1 232 100.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.4e-19 100.9 226 38.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-18 97.8 219 36.5
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.5e-18 97.4 230 38.7
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 2.5e-18 96.7 226 37.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.2e-15 87.8 230 33.9
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.2e-15 87.8 221 35.3
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.5e-15 87.4 230 33.9
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.0e-14 84.7 162 39.5
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.7e-14 84.0 122 45.9
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.7e-14 84.0 227 34.4
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.7e-14 84.0 168 36.9
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 2.9e-14 83.2 227 33.0
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.9e-14 83.2 225 32.9
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 3.8e-14 82.8 221 33.9
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 6.5e-14 82.0 163 38.7
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.9e-13 80.5 268 32.5
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.5e-13 80.1 221 33.9
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.2e-13 79.7 144 42.4
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 4.2e-13 79.3 161 35.4
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 5.5e-13 79.0 218 34.9
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 9.4e-13 78.2 218 33.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 9.4e-13 78.2 220 32.3
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.2e-12 77.8 231 33.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.6e-12 77.4 215 34.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.6e-12 76.3 221 34.8
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 7.9e-12 75.1 214 32.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.0e-11 74.7 230 31.7
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.4e-11 74.3 230 31.7
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.3e-11 73.6 225 30.7
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.0e-11 73.2 214 31.3
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 3.9e-11 72.8 172 35.5
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 3.9e-11 72.8 176 34.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.7e-11 72.0 224 30.8
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 8.8e-11 71.6 212 28.8
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 8.8e-11 71.6 212 28.8
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.1e-10 71.2 159 32.1
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.0e-10 70.5 225 33.3
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.0e-10 70.5 223 32.3
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.0e-10 70.5 160 36.2
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.6e-10 70.1 159 37.1
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.6e-10 70.1 208 31.7
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.6e-10 70.1 232 32.3
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.3e-10 69.7 162 33.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.3e-10 69.7 157 33.8
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 4.4e-10 69.3 224 31.2
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 5.7e-10 68.9 214 32.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 5.7e-10 68.9 225 32.9
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 9.7e-10 68.2 163 36.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-09 67.8 215 33.0
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.3e-09 67.8 221 30.3
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-09 67.4 232 28.9
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.2e-09 67.0 147 36.1
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.2e-09 67.0 144 36.1
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 2.2e-09 67.0 230 31.3
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.8e-09 66.6 147 36.1
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.7e-09 66.2 227 31.7
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.7e-09 66.2 241 29.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.7e-09 66.2 232 29.3
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.7e-09 66.2 220 29.1
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.8e-09 65.9 223 30.9
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 8.2e-09 65.1 217 28.6
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 8.2e-09 65.1 190 31.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 8.2e-09 65.1 224 29.0
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-08 64.7 227 31.3
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.1e-08 64.7 143 37.1
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.1e-08 64.7 168 33.9
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.1e-08 64.7 221 32.1
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.1e-08 64.7 216 30.6
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.4e-08 64.3 158 34.8
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.4e-08 64.3 80 50.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.4e-08 64.3 219 28.8
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-08 64.3 174 37.9
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.4e-08 63.5 217 28.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 3.1e-08 63.2 229 30.1
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 3.1e-08 63.2 214 30.4
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.1e-08 63.2 231 31.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 3.1e-08 63.2 213 31.5
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 4.1e-08 62.8 227 29.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.1e-08 62.8 226 29.6
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 5.3e-08 62.4 236 28.8
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 5.3e-08 62.4 127 38.6
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 7.0e-08 62.0 217 27.6
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 9.1e-08 61.6 121 37.2
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.2e-07 61.2 227 30.8
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.2e-07 61.2 125 36.8
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.5e-07 60.8 84 41.7
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.5e-07 60.8 215 28.8
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.5e-07 60.8 226 31.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.6e-07 60.1 216 29.2
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 2.6e-07 60.1 142 35.2
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 3.4e-07 59.7 166 33.7
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.4e-07 59.7 171 33.9
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.4e-07 59.7 169 34.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.4e-07 59.7 169 34.9
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 3.4e-07 59.7 164 33.5
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.4e-07 59.7 231 28.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 4.5e-07 59.3 129 36.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 4.5e-07 59.3 222 28.8
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.5e-07 59.3 147 34.7
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 5.9e-07 58.9 168 34.5
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 7.7e-07 58.5 167 33.5
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 7.7e-07 58.5 103 35.9
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 7.7e-07 58.5 148 33.8
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.0e-06 58.2 131 36.6
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.3e-06 57.8 166 30.7
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.3e-06 57.8 134 36.6
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.2e-06 57.0 157 31.8
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.9e-06 56.6 145 33.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 3.8e-06 56.2 155 32.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 5.0e-06 55.8 168 30.4
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 5.0e-06 55.8 218 29.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 5.0e-06 55.8 145 33.1
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 6.5e-06 55.5 132 34.1


User provided reference genes

Program Settings