Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1297.3 667 100.0
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.2e-279 964.9 741 75.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-276 955.7 737 71.8
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 3.3e-276 954.9 732 71.7
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.1e-275 950.7 737 71.4
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 9.2e-271 936.8 737 73.1
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 8.0e-267 923.7 738 69.0
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 5.2e-266 921.0 742 69.5
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.8e-265 917.5 737 70.0
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 1.3e-264 916.4 738 68.0
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 8.3e-264 913.7 728 69.6
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 1.1e-263 913.3 735 68.6
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 1.4e-263 912.9 731 68.4
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 1.2e-262 909.8 734 68.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 1.6e-262 909.4 726 68.6
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 3.5e-262 908.3 733 68.2
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 3.5e-262 908.3 732 68.4
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 4.6e-262 907.9 728 67.9
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 5.1e-261 904.4 737 68.2
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 5.1e-261 904.4 728 68.3
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 6.6e-261 904.0 728 67.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.5e-260 902.9 734 67.4
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 2.5e-260 902.1 728 68.1
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 7.3e-260 900.6 733 67.1
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 2.1e-259 899.0 735 66.4
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 2.8e-259 898.7 735 68.4
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 6.2e-259 897.5 734 66.6
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 8.1e-259 897.1 732 67.1
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.8e-258 896.0 755 66.1
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 4.0e-258 894.8 736 66.8
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 1.5e-257 892.9 730 67.3
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.9e-257 890.2 736 69.0
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.7e-256 889.4 726 67.9
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.7e-256 889.4 725 67.3
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 4.9e-256 887.9 738 67.1
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.1e-255 886.7 735 67.1
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 1.4e-255 886.3 737 66.4
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 2.4e-255 885.6 737 65.4
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 1.6e-254 882.9 728 67.3
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 2.1e-254 882.5 725 67.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.7e-254 882.1 715 67.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 4.6e-254 881.3 734 65.8
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 4.6e-254 881.3 720 66.8
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.0e-253 880.2 735 66.1
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.7e-253 879.4 727 66.0
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 3.0e-253 878.6 727 66.2
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.0e-253 878.6 766 66.3
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.6e-253 877.1 727 66.7
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 1.2e-251 873.2 723 66.9
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 5.2e-250 867.8 732 63.5
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 6.8e-250 867.5 732 64.1
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 7.6e-249 864.0 732 63.3
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.2e-248 862.4 737 65.9
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 8.4e-248 860.5 716 65.8
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 1.9e-247 859.4 658 69.6
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.9e-247 859.4 732 62.7
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 4.2e-247 858.2 723 65.4
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 2.1e-246 855.9 729 64.7
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.7e-246 855.5 735 65.0
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.7e-246 855.5 735 65.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.0e-246 854.4 752 64.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.7e-245 852.8 731 65.1
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.7e-245 852.8 727 65.6
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 2.3e-245 852.4 725 65.8
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 5.3e-242 841.3 716 64.5
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 2.0e-241 839.3 720 65.7
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.7e-240 836.3 724 66.0
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.2e-239 832.0 722 63.4
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 5.4e-239 831.2 724 63.4
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 9.3e-239 830.5 724 63.8
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 1.2e-238 830.1 723 63.8
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 1.2e-238 830.1 724 63.7
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.2e-238 830.1 642 69.8
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 4.6e-238 828.2 724 63.7
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 4.6e-238 828.2 724 63.7
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 4.6e-238 828.2 724 63.7
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 6.0e-238 827.8 724 63.7
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.0e-237 827.0 725 64.4
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.3e-237 826.6 725 63.4
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 3.0e-237 825.5 641 70.4
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.1e-236 823.5 739 62.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.1e-236 823.5 673 67.5
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.6e-236 821.2 680 66.9
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 2.8e-235 818.9 724 62.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.4e-234 816.6 724 63.0
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 5.3e-234 814.7 724 62.7
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.9e-234 814.3 716 62.2
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.5e-233 813.1 725 62.1
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 5.8e-233 811.2 722 61.9
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 2.2e-232 809.3 724 62.4
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 2.2e-232 809.3 724 62.4
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 2.2e-232 809.3 724 62.4
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 1.4e-231 806.6 726 61.4
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 5.1e-229 798.1 658 67.6
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.6e-227 793.1 675 65.9
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.6e-227 793.1 562 75.8
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.0e-221 773.9 653 65.2
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.8e-221 773.1 740 61.5
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 3.0e-221 772.3 711 62.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 3.7e-219 765.4 738 59.5
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.1e-218 763.8 732 59.8
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.1e-218 762.3 593 70.7
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.0e-216 757.3 725 59.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.9e-216 755.7 606 68.6
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.5e-215 751.5 666 61.9
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.6e-214 750.0 723 58.4
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-213 746.1 764 59.2
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.5e-209 733.4 670 60.9
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 7.2e-207 724.5 584 67.3
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.7e-201 704.5 693 57.6
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 4.4e-196 688.7 526 70.5
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.5e-184 648.3 583 61.9
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 5.9e-177 625.2 720 53.3
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 1.7e-171 607.1 613 57.3
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.8e-170 603.6 558 61.6
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 9.5e-159 564.7 473 68.7
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.4e-154 550.1 563 59.5
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.0e-149 532.7 581 50.3
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 6.6e-144 515.4 607 48.8
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 6.4e-131 472.2 588 44.4
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 5.1e-128 462.6 535 52.5
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.5e-124 451.1 623 41.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.9e-124 448.4 404 63.4
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.2e-123 447.2 404 63.1
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.7e-121 440.3 588 42.2
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.5e-114 416.0 315 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.5e-99 365.5 587 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.2e-98 363.6 582 39.5
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-97 360.9 411 56.4
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.3e-94 351.7 600 37.2
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-91 341.3 434 51.4
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.1e-89 332.8 589 35.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.5e-84 318.2 716 34.6
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.1e-69 268.9 266 60.2
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.1e-69 268.9 214 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-64 250.8 371 43.7
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-48 198.7 247 51.4
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.2e-48 196.8 153 73.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.8e-40 169.9 132 65.9
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.2e-24 117.1 138 44.2
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 8.9e-24 116.3 60 86.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 5.8e-23 113.6 64 81.2
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.6e-17 95.5 97 53.6
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 4.8e-09 67.4 43 76.7
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.8e-08 65.5 43 76.7
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 4.0e-08 64.3 98 41.8
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 2.0e-07 62.0 45 68.9
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 2.0e-07 62.0 45 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 9.9e-07 59.7 96 38.5


User provided reference genes

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